Gene Rru_A1098 details

Gene Information

• Locus tag: Rru_A1098
• ID: 3833405
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodospirillum rubrum ATCC 11170
• Kingdom: Bacteria
• Replicon accession: NC_007643
• Strand: +
• Start bp: 1287740
• End bp: 1289662
• Gene Length: 1923 bp
• Protein Length: 640 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 637825187
• Product: membrane protease FtsH catalytic subunit
• Protein accession: YP_426186
• Protein GI: 83592434
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0465] ATP-dependent Zn proteases
• TIGRFAM ID: [TIGR01241] ATP-dependent metalloprotease FtsH

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.13074
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAACCTCA GCAGAAACCT GCTCCTGTGG ATCATCATCG CCGTACTTCT GGTGGTGCTG 
TTCAATCTGT TCCAGACGTC GGCGCCGCGT GGACCGCAGA CCACGGTTCC CTATTCGGAT 
TTCCTGTCGA GCGTCGATGC CCGGGAAGTT CGTGACGTCG TCATCAAGGG CGATTCGATC 
AGCGGCCACA CCACCGATGG CCGCGCCTTC ACCACCTATG CTCCCCGCGA CGCGGACATG 
GTCAGCCATC TGCGCGACAG CGGCGTGCAG ATCTCGGCCG TGCCGGCCGA GGACAATGTT 
CCGACCTTCT GGAGCATCCT GATTTCCTGG TTCCCGTTCC TGCTGCTGAT CGGCGTGTGG 
ATCTTCTTCA TGCGCCAGAT GCAGTCCGGC GGCGGCAAGG CCATGGGCTT TGGCAAATCG 
CGGGCCAAGC TGCTGACCGA GAAGACCGGC CGCGTCACCT TCGACGACGT GGCGGGCATC 
GACGAGGCCA AGCAGGAACT GGAAGAAGTG GTGGAATTCC TGCGCGATCC GCAGAAGTTC 
CAGCGCCTGG GCGGCAAGAT TCCCAAGGGC GTGCTGCTTG TCGGCCCCCC GGGTACGGGT 
AAGACGCTGC TGGCCCGCGC CATCGCCGGC GAAGCCAATG TGCCGTTCTT CACCATCTCG 
GGCTCGGATT TCGTTGAAAT GTTCGTCGGT GTCGGCGCCA GCCGTGTCCG CGACATGTTC 
GAGCAGGGCA AGAAGAACGC GCCTTGCCTG ATCTTCATCG ACGAAATCGA CGCCGTCGGT 
CGCCATCGCG GCGCCGGTCT TGGCGGCGGC AACGACGAAC GCGAGCAGAC CCTGAACCAG 
CTGCTGGTCG AGATGGACGG CTTCGAGGCG AACGAGGGGG TGATCCTGAT CGCCGCCACC 
AACCGCCCCG ACGTGTTGGA TCCGGCCTTG CTGCGTCCGG GCCGCTTCGA CCGTCAGGTT 
ACCGTCTCCA ACCCCGATAT CATGGGGCGC GAGAAGATCC TGAAGGTCCA TATGCGCAAG 
ACGCCGCTCG GCCCGGATGT CGACGCCAAG GTCATCGCCC GTGGCACCCC CGGATTCTCG 
GGCGCCGATC TGTCCAACCT TGTCAACGAA GCCGCCCTGC TCGCCGCCCG CAAGGGCAAG 
CGCGTGGTGA CCATGGCCGA GTTCGAGGAG GCCAAGGACA AGGTGCTGAT GGGCGCCGAG 
CGCCGCTCGA TGGTGATGAC CGAGGACGAG AAGGAAAAGA CCGCCTATCA CGAGGCCGGC 
CATGCCCTGA TCGCCATCCA CCAGGAAGGC CACGATCCGC TGCACAAGGT GACGATCATC 
CCGCGTGGCC GCGCCCTGGG CGTGACCATG TCCCTGCCCG AACGCGATCG CTACGGCTAT 
TCGCTGAAGG AACTGAAGGC CCGCATCGCC ATGGCCTTCG GCGGCCGCGT CGCCGAGGAA 
ATGATCTATG GCACCGAGAA CGTCACCACC GGCGCCTCCA ACGACATCAT GCAGGCGACC 
GATCTCGCCC GCCGGATGGT CACCGAGTTC GGCTTCTCGG AAAAGCTGGG GCCCTTGCGC 
TATACCGATA ACCAGGAAGA GGTTTTCCTT GGCCATTCGG TGACCCAGCA CAAGAACCTG 
TCCGACGAGA CCGCCCGCAT GATCGACGAG GAGGTTCGCC GCTTCGTCGA GCAGGGCGAG 
GCCCGGGCCC GCGAAATCCT GGGCAAGTAC AAGGACGAGC TGGAAATCAT CACCCGCGGC 
TTGCTGGAAT ACGAGACGCT GTCGGGCGAT GAGGTCAATA AGCTGCTGCG CGGCGAGGAT 
CTCAACCGCG CCGAACAGCC CGCGCCGCCC CGGGACCGCT CGGGCCGTCG GGCCTCGGTT 
CCCACCAGCG GGCCGGCGGC GGGCGGTGTC GGCGGCGATC CGGAACCCCA GCCGGGTGCC 
TGA 

 

Protein sequence

MNLSRNLLLW IIIAVLLVVL FNLFQTSAPR GPQTTVPYSD FLSSVDAREV RDVVIKGDSI 
SGHTTDGRAF TTYAPRDADM VSHLRDSGVQ ISAVPAEDNV PTFWSILISW FPFLLLIGVW 
IFFMRQMQSG GGKAMGFGKS RAKLLTEKTG RVTFDDVAGI DEAKQELEEV VEFLRDPQKF 
QRLGGKIPKG VLLVGPPGTG KTLLARAIAG EANVPFFTIS GSDFVEMFVG VGASRVRDMF 
EQGKKNAPCL IFIDEIDAVG RHRGAGLGGG NDEREQTLNQ LLVEMDGFEA NEGVILIAAT 
NRPDVLDPAL LRPGRFDRQV TVSNPDIMGR EKILKVHMRK TPLGPDVDAK VIARGTPGFS 
GADLSNLVNE AALLAARKGK RVVTMAEFEE AKDKVLMGAE RRSMVMTEDE KEKTAYHEAG 
HALIAIHQEG HDPLHKVTII PRGRALGVTM SLPERDRYGY SLKELKARIA MAFGGRVAEE 
MIYGTENVTT GASNDIMQAT DLARRMVTEF GFSEKLGPLR YTDNQEEVFL GHSVTQHKNL 
SDETARMIDE EVRRFVEQGE ARAREILGKY KDELEIITRG LLEYETLSGD EVNKLLRGED 
LNRAEQPAPP RDRSGRRASV PTSGPAAGGV GGDPEPQPGA