| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A1035 |
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| Symbol | |
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| ID | 3833496 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodospirillum rubrum ATCC 11170 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007643 |
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| Strand | - |
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| Start bp | 1226067 |
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| End bp | 1228820 |
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| Gene Length | 2754 bp |
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| Protein Length | 917 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637825124 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_426123 |
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| Protein GI | 83592371 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTCGCA TTCCTTCGCG TTCGGATAGC CGGTTCGTTT TATTCCTGTG CTCTACGGCC
CTTCTGGTTA CCGCCTTCGC TTTTTTCGCC ACCTATGGCG GCCTTAAAGA ACTAAGAGCC
CGCGACGTTT GGCGGGCCGA AGCACACTCA AAGGACCTAA CCAAAGCCAT AAGGCAAAGC
ACGACAAATT ACCTAGAAAA AGTTGAAATA TCACTCAATA CAATCGCTTA TGTGATTGAA
AAGGATAATC ACATAGGAAA ACGAGAAAAA GAACAGATTG AAAACCTTCT ATCAAACCAA
TTCTTGATAT TCCGAGACAA CGAAAATATT TCCATTACAA ACGAAAAAGG CGAAATAATA
TTTCACGAAG GCCTAAACAC TCCTTTAAAT TTCAGTGTCT CTGACCGAGA CTATTTCATT
AGCTTAAAAA ACGGCACCAA GACCGGCTTG GTGGCGAGCC CGGTTCTGAT CAGCCGCCTT
TCGAAAAAGC CGGTTATCAT CTTTTCCAGA TCCTACACAA AAGCCGACGG AACCTTCGGC
GGCATCGTCG CCATGCCGGT TCCGACCGAT CGCTTTCAGC ACCTCGTTTC CGGGTATACC
CTGGGCGGGA GGGACAGGCT CAGCCTGTTT TCGGAAGATC GCTCGCTGAT CGTCAGCACC
GAGCCCACCA CCATAGGCGC GAAAGCCCCC GCCAATCCCG CCCCCCCTCA TCCCTTCGAT
GATCGTCCAG ACCACCCCAT TCAGGATGGA ACCCAACGCC ACATCGATCC ATCGGACAAC
ACAACAAACA TTATTACCAT CGCTCAAATT CCTTCTGCGG ACATGCATGT CTTATGCGAA
ATATCAGAAG ACGACTATCT GTCAGAATGG TATGAAACTC GAAACATCAG CCTGTTATTT
GTCGCATTTT TTCTATCTTT ATTTTATCTA TCCCTGTTTA TTTTATATTT TTTTTGGAGA
AGACAAAAAG AAGACGCCAC CCGGCTTCGT GAGAGCAACG AACAAACCCA GACCGTCCTT
AGAACCTTGC GCGAGTCGGA TAACGCGCTG GCGGCGGCCT GCGAGGTTGG CGGATTGAGT
ACCTTCATCC TCGATCTCTC CGCCAACCTC TGGATGCGAT CGCCCGAACA AGAAGCCATC
TTCGGACTCG ACGGCCGTCA CCCCCGAACA CGGGACGCTT GGCACGCCCT GATCTACCCG
GAGGATCGGG GGGGAGTGCT CGATTATTTC GCCGAACGAG ACGCTTTGGA TACCGGCGAA
TTCGATATCC AATACCGCAT CATCCGGCCG AGCGACGGGG CCGTTCGCTG GATTCACGGG
GCGGGGAAAC TCGAGCGGGC CGAGGATCTG TCTGTGCGGC GGCTGGTCGG CGCGATCAAG
GATGTCACCG AGATCAAGGA AGACCTCGAC CGGACCGAAT TCCTCGCCTA CCACGACAGC
TTGACCAATT TGCCCAATCG CCTGCTTCTG GCCGACCGCA TGGGACAAGC CCTGGCCCTG
GCCGTCCGTC GGCAAGATCT GCTCGCCGTC TGCTACCTTG ATCTCGATAG CTTCAAACCC
ATCAATGACA CCTGGGGGCA TAGCGTCGGC GACGCCCTGT TGATCGAGGT CGCCCGACGC
TTGCAGCAGA ACGCCCGGGC GGAAGACACC GTCGCCCGTT TGGGTGGCGA CGAATTCGTG
GTTTTGCTGT GTGGCTTCAA GGCCGAAGCC GAGGTGGAGC GGGTCGTGCG GCGCATGATG
GACTCGATCG CCACGCCCTA TTCCGTCGGC GGCAGGCAGG TCACCCTGAC CGTCAGCATG
GGGATCACCA CTTTTCCCCG CGACGCCGAG CAGGAGGCCG ACGCCCTTAT CCGCCATGCC
GATCAGGCGA TGTACGAGGC CAAGCGTCAG GGCCGCAACC GCATCCATTA CTTCGATGCG
GAAAAGGACC GCCTCCACAA GGAGCGCCAG ACCTATTATA ACCGCATGGT CGCCGCGCTT
GAAGCAAATG AATTCCAGCT TCACTATCAG CCGACCATCG ACCTTGTCAG CGGCGTCTTC
TCCGGAGTGG AAGCCTTGAT CCGCTGGCGC CACCCCGAGC GCGGCCTGCT GTTGCCCGGC
GCCTTTCTTC CCGACATCGA GGACACCGAT TTAACGGTTC CGCTCGGCGA ATGGATCTTG
CGCGAGGCCC TGCGACAAAA GGAACGCTGG CAGGACATGG GGCTGAGCCT CACCGTCGGG
GTCAATCTTT TCGGCTACCA CCTTCAGCAA GACAGCTTCG TCGCGCGCTT CGCCGCCATT
CTCGCCGAGT TTCCCGCGGT CCACCCCGAA GAGGTGACCC TTGAGATCGT CGAGACCACC
GCCATGCGCG ACCTTGCGGC GATTTCGGAA AAGATGTGGG ACTGCAAGCG CTTCGGCGTG
GATTTCGCCC TTGATGATTT CGGCACGGGC TATTCGTCGC TCACCTATTT CCGCCGGCTC
CCGGTGACCC ATTTGAAGAT CGACCGGTCC TTCGTCACCG ATATTCTTGA AAACGCCCAG
GATCAGGCCA TGGTGCAGAG CATCGTCGCC ATGTCCCATG CCCTGGGGCG CAAGGTGGTC
GCCGAAGGCG CCGAGACCTT GGCCCATTGC GCCGCCCTTG GCCGCTATGG GTGCGATTTC
GCCCAAGGCT TCGGCATTGC CCGCCCCATG CCGGGCGAAG ACATTTTCCC CTGGGCCCGC
CAGTGGAACA GGCCCGACTC TTTGAGAGTC AGCCTAGGCG AGGCCTTCGC CTAG
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| Protein sequence | MLRIPSRSDS RFVLFLCSTA LLVTAFAFFA TYGGLKELRA RDVWRAEAHS KDLTKAIRQS
TTNYLEKVEI SLNTIAYVIE KDNHIGKREK EQIENLLSNQ FLIFRDNENI SITNEKGEII
FHEGLNTPLN FSVSDRDYFI SLKNGTKTGL VASPVLISRL SKKPVIIFSR SYTKADGTFG
GIVAMPVPTD RFQHLVSGYT LGGRDRLSLF SEDRSLIVST EPTTIGAKAP ANPAPPHPFD
DRPDHPIQDG TQRHIDPSDN TTNIITIAQI PSADMHVLCE ISEDDYLSEW YETRNISLLF
VAFFLSLFYL SLFILYFFWR RQKEDATRLR ESNEQTQTVL RTLRESDNAL AAACEVGGLS
TFILDLSANL WMRSPEQEAI FGLDGRHPRT RDAWHALIYP EDRGGVLDYF AERDALDTGE
FDIQYRIIRP SDGAVRWIHG AGKLERAEDL SVRRLVGAIK DVTEIKEDLD RTEFLAYHDS
LTNLPNRLLL ADRMGQALAL AVRRQDLLAV CYLDLDSFKP INDTWGHSVG DALLIEVARR
LQQNARAEDT VARLGGDEFV VLLCGFKAEA EVERVVRRMM DSIATPYSVG GRQVTLTVSM
GITTFPRDAE QEADALIRHA DQAMYEAKRQ GRNRIHYFDA EKDRLHKERQ TYYNRMVAAL
EANEFQLHYQ PTIDLVSGVF SGVEALIRWR HPERGLLLPG AFLPDIEDTD LTVPLGEWIL
REALRQKERW QDMGLSLTVG VNLFGYHLQQ DSFVARFAAI LAEFPAVHPE EVTLEIVETT
AMRDLAAISE KMWDCKRFGV DFALDDFGTG YSSLTYFRRL PVTHLKIDRS FVTDILENAQ
DQAMVQSIVA MSHALGRKVV AEGAETLAHC AALGRYGCDF AQGFGIARPM PGEDIFPWAR
QWNRPDSLRV SLGEAFA
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