| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A0985 |
|---|
| Symbol | |
|---|
| ID | 3833544 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | + |
|---|
| Start bp | 1172317 |
|---|
| End bp | 1173843 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637825074 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_426073 |
|---|
| Protein GI | 83592321 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGATAA AGCCGGAAAG GACGCTGCTT TCCGCCGAGG CGACTCTGAT CGCTAGCGGT
ACGATTGGTG TCATCGCCAT TCTTGGTCTT GTTACGGTCC TGCTGGCCAA CTTGTGGAAA
GACACCACCC GGGATGCCGA ACGGTCGGCG TCGAATCTCA TTCGGTTGAT CGACGCCGAT
GTCCGCCGCA CCATCGAACT GTATGATCTG GCCTTGAGCG GGATCATCGA AGCGGAAAAA
TTCAAGACCA TCAAAGATCT TTCCCCCGAG GCCCGCCACG CCCTGATTTT CAGCCGGGTC
GTGGCCACCC ATTACATGGG GGGGCTGCTG CGCCTGAACG CGGCGGGGGA TATCATCGCC
GATTCAACCT CGCTTGAGCC GCGCGTCGGC AATTTCGCCG ATCGCGATTA TTTCCAACTT
CATAAAGCCG ATCCCGACCT CGGTCTGCTG ATCGGCCGCC CGATCAAAGT CCGCCTGAGC
GATCAGGAAT GGCGCATTCC GATTACGCGG CGTGTCTCCA CGGCCGATGG ACGGTTTGAT
GGCGTTGTCA TGGGGGCGAT GCGGGTCAGC TATTTCGACC ATCTGTTTGG TAAGCTCGAT
ATCGGGTCTC AGGGCTCGAT CACTTTGCTC AAAAGCGATG GAACGCTTCT GGCGCGGCGG
GGTTTGCCGG GCGAGTTGGA TATGGTTGGT CGCAACGGTC TGGATTTTCC CAACTTCCAT
AGAATCATCA ACGGCTACTC GAAAAATTTT TCGGGTTCTT CCGCTTATGA CCATATCCGG
CGGATTTATT CCTTCGCCCA TGTCGAAAAC CTGCCTTTGA TCGTTGTCGT CGCCTTATCG
GCAAACGAGG TTTATGGCGG CTGGATCCAG GCCGCCATCG TGGTCGGCGG CATCACGTTT
GTGCTGTGTT TGGGGGTTGG CGCCGTTGTC GTTTTGCTGT TGCGCGAGTT TCGCCAGCGG
CGCTTGACCG AGAGCGCCTT GAGCGAGCTG GCCGTGACCG ATGGTTTGAC CGGGCTGTGT
AACCGCCGTC ATCTTGAAGA GGTCTTGCGG GTGGAATGCG CCCGCTCGGC GCGCAACCAG
CAGCCGCTCG CCCTTTTGAT GATCGATGTC GATCACTTCA AAGCCTTCAA CGATCGCCAC
GGCCATCGGA TCGGCGACGG GGTCTTGGTC GATCTCGCCG TTATCATCCG CGCCCTATTG
AAGCGCCCCG CCGATGTCGG GGCGCGCTAT GGCGGCGAGG AATTCGCCGT GATCTTGCCC
GATACCGATC TTGCCGGCGG GCTGCGGGTC GCCGAGGCGA TCCGGGCGCG CATGGCCGGG
CGTCCGCCCG TCGGTCAGGA TCTTCGCGCC GGCACGGTCA GCATCGGCGT CGTTTCCAGG
ATTCTGACGC CGGGGTATGG TGTGGATGAC CTTGTCATGG ACGCCGACAA GGCGCTTTAC
GCGGCAAAGG GAGCAGGGCG CAATCGCGTT GTTCCCGCCG CCGATGAAGC TGATAGGGAG
GACCTGATAT CTTTGAGCAC TGAGTGA
|
|---|
| Protein sequence | MQIKPERTLL SAEATLIASG TIGVIAILGL VTVLLANLWK DTTRDAERSA SNLIRLIDAD
VRRTIELYDL ALSGIIEAEK FKTIKDLSPE ARHALIFSRV VATHYMGGLL RLNAAGDIIA
DSTSLEPRVG NFADRDYFQL HKADPDLGLL IGRPIKVRLS DQEWRIPITR RVSTADGRFD
GVVMGAMRVS YFDHLFGKLD IGSQGSITLL KSDGTLLARR GLPGELDMVG RNGLDFPNFH
RIINGYSKNF SGSSAYDHIR RIYSFAHVEN LPLIVVVALS ANEVYGGWIQ AAIVVGGITF
VLCLGVGAVV VLLLREFRQR RLTESALSEL AVTDGLTGLC NRRHLEEVLR VECARSARNQ
QPLALLMIDV DHFKAFNDRH GHRIGDGVLV DLAVIIRALL KRPADVGARY GGEEFAVILP
DTDLAGGLRV AEAIRARMAG RPPVGQDLRA GTVSIGVVSR ILTPGYGVDD LVMDADKALY
AAKGAGRNRV VPAADEADRE DLISLSTE
|
|---|
| |