| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A0612 |
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| Symbol | |
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| ID | 3833985 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodospirillum rubrum ATCC 11170 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007643 |
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| Strand | - |
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| Start bp | 724727 |
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| End bp | 727912 |
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| Gene Length | 3186 bp |
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| Protein Length | 1061 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637824696 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_425703 |
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| Protein GI | 83591951 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCATGA AGCGCTGGGT CCTGGCTTTT CTTATCCTTG AACTTTTCGT CAGCTGCGTG
CTTTTCCTTC AGTTCCGCGA GGAACGTCAG CGTCTTTTCG CCGCCCATGT CGATCGTACC
CTGCTTGCCT GGGAGGCCGC CCGGGAAAGC CGCCTCGATC TGCAACGGAT CATTCAGGGC
GCCCTGCTCG CCGACGGGCG GATCGCCAGC CTGCTCTCCC AGGCGCTCGC CACGCCCGCC
GATCGCCGCG CCCCCCTCCG CACCGCCTTG GCCGACCGTT TCGCGCCATC CCGGCCCGCG
CTTCTGGCCC ATGGCATCAC CATGACCCAG GTTCTGCTGG CCGATGGCGC GACGTTCTTT
CGCCTGAACA ATCCCCAACG CTCGAACGCG GTCGAACCGA TCCCGCGGCC GGCCCTGAGG
GAAGTCCTGG CCTCGGCCCG CCCGGTCGCC GCGGTGGAAA CAACCTCGCG CGCCACGGCG
CTGCGCCTGA TCTCGCCGGT CTTCCACGAC GCCCGTCTGG TTGGCGTGCT GGAAACCGCC
GTCCCCCTCG CGGAGATGCC CGCCCTCCTC GATCACCTGG ACAAAACCCG CCGGCACAGC
CTGCTCGGCC CCTTACCCGC CGGGGAAAGC GGCGGACGGC TGGCCCTGGC CCCGCTCCCC
CCCGGGGCCG GCGCCGCTCC GGATCCCGAG ACCGCCCGAC TGGTCGCCGC TTTGGGCGAT
CTTGGCCAGC CTTTGGCCGA CGGGCACCCC TTCGCCCGCT CCCTCGCCGG AGCCGATGCC
GATCGGGTGA TCACCATCGT GCCGATCAGC GATTACTCGG GGGAGAGCCA CGGCTATCTC
ATGGCCAACG CCGTCGAGCC GGCCCTTGAG ACAATTCGCC GCAGCCTGAT CATCAGCGCC
ACCGTCACGG CGTTTTTGCT GCTCGCCGCC CTCTTGCTGC TCGCCCAGTT GGTCAACAGC
CGACGCGCCC TGCTGCGCGA GCGCGAAGAT ATGCGCGCGA TCACCGACAC CATGGGCGAA
GGGCTTTATA TCCTTGATAA CGAAGGGCTC ATTGCCTTCG TCAACCGCTC GGCCGAAACC
ATGCTCGGCT ATTCCCGCGA AGACCTGCTT GGCGCCAAGG CCCACAGCCT GTTTCATAGC
CACGACGGCG ACGGCCGGCC GCAAGACGCC GATGCCTGCG CCATACTCCG CGCCATGCGC
GAGCGCCGCC ATTTCACCAG CAGCGACGAG GCCTTCATCC GCAGCAATGG CACGCGCTTT
CCCGTGGAGG TGCGCTGCGC ACCGCTGACC GCCGATGACC CCCTGCTCAA GGCCCTGGCC
CATCAGGCGC CCCCGGGCGG CCCCGGCGGC AGGCTGGCGG CCCGTCTGCG CGCGGCAATG
GGCAACCGGC CCCGGCTCTC GGTCGCCCTC TCGCGGCTGT TCGGTCACGC CGACGCCTTG
CTGCTGCCAA CCAATCCCCG CGCCTCGGTC ATCACCTTCG TCGACATCAC CGAACGCAAG
GCCAGCGAAG CAGCCCTGCG CAAGCTGTCG CGCGCCGTCG AGCAAAGCCC GGCCTCGGTG
ATCATCACCG ATGCCCGGGG CACCATCGAA TACGTCAATC CACAGTTCGA GAAATCCACC
GGTTACCGCT CGTGGGAGGT CATTGGCGCC AATCCACGGA TTTTGAAATC GGGCCATATC
GCCGAGGCCA CCTATGCCGA GATGTGGAAA ACCCTGAACG AGGGCAGGGA ATGGCGCGGC
GAACTGCATA ACCGGCGCAA GGATGGCACG CTCTATTGGG AATACGCCTC GCTGTCACCG
GTCAAGGACC GCCGTGGGCG CACCACCCAT CTGCTGGCGG TGAAAGAGGA CATCACCGCC
CGCAAGGAGA CGGAAAACCG CCTGATCCGC CAAGCCAATT TCGATGAACT GACCGATTTG
CCCAACCGCT CGCTGTGTTA CAGCCGGCTT AAGGAGGCGA TTGTCGAGGC CGAGGCCACC
GCCAGCATCG TCGGCGTGCT GTTCATCGAT CTCGATCACT TCAAGAACGT CAACGACAGC
CTGGGGCATG CCGTTGGCGA TAAACTGCTT ACAGCGGTCG CCCAGCGTCT GCGCGAGGTG
GCGAGACCGG GCGATACGCT GTCGCGCCAG GGCGGCGACG AATTCCTGAT GCTGCTACCC
GATCTGAACG GCTCCGAAGC CGGCCATGGG GTTGCCCAGG CCATCCTGAC TGCCCTCGCC
CCGCCCTTTT CCATCGATGG CCGGGAAATC TATATGGCGG CCAGCATCGG CATCACCTTT
TTTCCGCGCG ACGGGCGCAG CGCCGCCGAA TTGCTGCGCA ATGCCGATTC GGCGATGTAC
ACGGCCAAGG AATCCGGTCG CAACGCCATC TGCTTCTTCT CGCCTGAAAT GGAAATCCGC
GCCGCCCAGC GGCTGGCGAT CGAAGGGGCG CTGCGTCAGG CCCTGGCCCA TGAGGAATTG
CGCGTCGCCT ACCAGCCGCT GGTGCGCACC TCCGATGCCC GGCCGATCGG CGCCGAAGCC
CTGCTGCGCT GGACCAGCCC CACCCTGGGC GAGGTGTCGC CCACCGAGTT CATCAAGGTC
GCCGAGGAAA CCGGCCTGAT CGTGCCGATC GGCGCCTGGG TTCTCGATCA GGCGGTGGCC
GAGGCCGCCC GTCTGCGGGC CGAGGGCTAC GGCGCCTTCC AAATCGCCGT CAATGTCTCG
GTCCGTCAAT TCCGCGGCGG CGATTTGGCC GGACTGGTCA GCGACACCCT CAAGCGCCAC
GATTTTCCCG CGGCCGGATT GGAGCTGGAA CTGACCGAAA GCCTGCTGCT CGATGTCACT
CCGGCGATCA CCACCACCCT TCAATCGCTT TCGGCCCTTG GCGTGCGGCT GTCGCTTGAT
GATTTCGGAA CGGGCTATTC GGCGCTCAGC TACTTGAAGA CCTTTCCCTT CGATATTCTC
AAGGTCGATC GTTCGTTCAT CCGCGATATC TCAAGCGCCC CCGATAGCGG GGCCCTGGCG
CGGGCGATCA TTGCCATGGC CCGGGGTCTT GGCCTCGCCA CCATCGTTGA AGGGGTGGAA
ACCGAAGAAC AATGCGCCTT CGCCCGCGCC GAAGACTGCG ACATCATGCA AGGGTTTCTG
TTTGGCAAAG CGATGACGCC CGCTGATCTA CGCCGAATGC TGGACGAGAA GGCGGCGGCG
GAGTAG
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| Protein sequence | MPMKRWVLAF LILELFVSCV LFLQFREERQ RLFAAHVDRT LLAWEAARES RLDLQRIIQG
ALLADGRIAS LLSQALATPA DRRAPLRTAL ADRFAPSRPA LLAHGITMTQ VLLADGATFF
RLNNPQRSNA VEPIPRPALR EVLASARPVA AVETTSRATA LRLISPVFHD ARLVGVLETA
VPLAEMPALL DHLDKTRRHS LLGPLPAGES GGRLALAPLP PGAGAAPDPE TARLVAALGD
LGQPLADGHP FARSLAGADA DRVITIVPIS DYSGESHGYL MANAVEPALE TIRRSLIISA
TVTAFLLLAA LLLLAQLVNS RRALLRERED MRAITDTMGE GLYILDNEGL IAFVNRSAET
MLGYSREDLL GAKAHSLFHS HDGDGRPQDA DACAILRAMR ERRHFTSSDE AFIRSNGTRF
PVEVRCAPLT ADDPLLKALA HQAPPGGPGG RLAARLRAAM GNRPRLSVAL SRLFGHADAL
LLPTNPRASV ITFVDITERK ASEAALRKLS RAVEQSPASV IITDARGTIE YVNPQFEKST
GYRSWEVIGA NPRILKSGHI AEATYAEMWK TLNEGREWRG ELHNRRKDGT LYWEYASLSP
VKDRRGRTTH LLAVKEDITA RKETENRLIR QANFDELTDL PNRSLCYSRL KEAIVEAEAT
ASIVGVLFID LDHFKNVNDS LGHAVGDKLL TAVAQRLREV ARPGDTLSRQ GGDEFLMLLP
DLNGSEAGHG VAQAILTALA PPFSIDGREI YMAASIGITF FPRDGRSAAE LLRNADSAMY
TAKESGRNAI CFFSPEMEIR AAQRLAIEGA LRQALAHEEL RVAYQPLVRT SDARPIGAEA
LLRWTSPTLG EVSPTEFIKV AEETGLIVPI GAWVLDQAVA EAARLRAEGY GAFQIAVNVS
VRQFRGGDLA GLVSDTLKRH DFPAAGLELE LTESLLLDVT PAITTTLQSL SALGVRLSLD
DFGTGYSALS YLKTFPFDIL KVDRSFIRDI SSAPDSGALA RAIIAMARGL GLATIVEGVE
TEEQCAFARA EDCDIMQGFL FGKAMTPADL RRMLDEKAAA E
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