| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A0558 |
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| Symbol | |
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| ID | 3834236 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodospirillum rubrum ATCC 11170 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007643 |
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| Strand | - |
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| Start bp | 659064 |
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| End bp | 661115 |
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| Gene Length | 2052 bp |
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| Protein Length | 683 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637824642 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_425649 |
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| Protein GI | 83591897 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGCCA GCCCGCAAGC CCCCACCCCG CCCGATCGTT CGTCGCCCTC CGTCTCCTCG
AACCTTGGGG CGGAGGGCGC GGGCGGGCGT CGTCTATGCG GTTCGGTGGT CTTGTCGGCG
GGGAAAATCC TCTCCGTCGA TAAGACCCTC TGGCAAGCCC TAGGGCTTTC GGCCGAGTCG
CTCAGCGGCT TGCCCTTCCT CTCGTTCCTT GAGGACCCCT CGCGCGAGGT GTTGGCCGCG
CGCCTGCGTC TGGCCGGACC GCCCTGGGAC CTGCGCACGG CGCTAAGGGT CGATGGCCGG
GCCATTCCCG TCGTGCTACG CGGCGACGGA GCGGCCGATA GAACGACGGA TACCCCCCTT
CAGGTGATCC TCATCACCCT CGCCCCCCAA GAGGGAGAGG TCGAGCCCGT TTCCCAATCG
GCGCTGTTTG ACCATATCCC CCTGGGCGTG ATGCTCAGCG ATGGCCTTGG CCGGATCGCC
TATGCCAATC CGGCCTTCCT GGCCGAGGAC ATCGCCGCCG TGCGCGCCCT TCTGGGGGCG
ACTCCCCAGG CCCTGGCCAC GGGATACCTT CATGAGGGAC TGGCGCGCAC CCTGTGGGAG
GATTTGCTCT GCGGGCGGGT CTGGCGAAAC GACGTGGACC TGCCGACCGC GGACGGCCAG
CGCACCCACA GCCGTCTGAC CATCATCCCG CTGCGTCGCG ATGACGGCGC GGTCGATCGC
CTGATGACGG TGATCGAACC CCGCTCGCCG GCGACCGACA GCCAAGCCTG GCAGCAGGTC
AACCACGACA CCCTGACCGG CCTGCCCAAC CGGGTTCTGT TCCAGGACCG TCTGCTCACC
GCCCTGGCTT CGGCCCGCCG CCGCAACGAT CAACTCGCCG TGCTCTTTGT CGATCTCGAC
CATTTCAAGA CGGTCAACGA CTCGCTTGGC CATTCCTTCG GCGATCAGTT GCTTCAACAG
GTGGCCACGC GCTTGTCGCA GTGCCTGCGC GACAGCGACA CCCTGGCGCG CATGGGCGGC
GATGAATTCA CCATCGCCCT GACCGGCGAC GGCCACCAGC GCGACTATGC GATGATCGCC
AACCGCATCC TTGAAACCCT GCGCCGGCCC TTCACCCTGG AGGGCGGGCA CGAGGTGCTG
ATCGGCAGTT CGATCGGCAT CACCCTTTTT CCCAATGACG CCGAAGACGT CGATACCTTG
TTGCGCAACG CTGATACGGC GATGTATCGG GCCAAGGCCT CGGGGCGGAA CGCCTTTCAG
TTCTTCACCG AGGAAATGAA CCGGGAAATC CAAAGCCATC TCGACCTGGA AAACGCCCTG
CGCCGGGCCG TGCGGGCGAT GGATTTGACC ATCCATTACC AACCGGTGGT CGACAGCGCG
ACCCTGGCGG TGGTCTCGGC CGAAGCCCTG GTGCGCTGGC CCTTGGCCGA CAAGGGGTTC
ATCCCGCCCT CGCGGTTCAT TCCGGTGGCC GAGGAACTGG GGCTGATCGA CGAGATCGGC
GGCTGGGTGC TGTGGAACGC CTGCACCCAG GCCAAGGTCT GGCAGGCTCA GGGGGCGAAG
GCCTTTCGCG TTTCGGTCAA TGTGTCCTGG CGCCAGTTGC GCAATCCCGA TTTCGCCCTG
CGCGTCCGCG AGGCGCTAGA GGGAACCGGC CTTGGCGCGG CGTTCCTCGA GCTGGAAATC
ACCGAGGGGA TGGTGCTGCG CGATCCCCAG GGCATCGCCC CGGCGCTGAT GGCCTTATCC
GAGATGGGGG TGGCCCTGGC GATCGACAAT TTCGGCTCGG GCCACAGCTC GATCAAATGC
CTGCGCCAGT TTCCCTTTTC CATCCTCAAG CTCGACCGCT CCTGCGTGGC CGATGTGCTG
ACCAGCCACG AGGATGCCGT TCTTGTGGAA ACCGCCGCGA TCATGGCCCG GCGCCTCGGC
CTAACCGTCG TAGCCGAAGG CGTGGAAACC CACGCGCAAC TAGAATTTCT GCGCGAGCAC
TATTGCGATC TGATCCAGGG TTATCTGTTC GGCCGGCCGC TGCCGCCCGA GGACTTCGCC
CGTATGCTGT GA
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| Protein sequence | MSASPQAPTP PDRSSPSVSS NLGAEGAGGR RLCGSVVLSA GKILSVDKTL WQALGLSAES
LSGLPFLSFL EDPSREVLAA RLRLAGPPWD LRTALRVDGR AIPVVLRGDG AADRTTDTPL
QVILITLAPQ EGEVEPVSQS ALFDHIPLGV MLSDGLGRIA YANPAFLAED IAAVRALLGA
TPQALATGYL HEGLARTLWE DLLCGRVWRN DVDLPTADGQ RTHSRLTIIP LRRDDGAVDR
LMTVIEPRSP ATDSQAWQQV NHDTLTGLPN RVLFQDRLLT ALASARRRND QLAVLFVDLD
HFKTVNDSLG HSFGDQLLQQ VATRLSQCLR DSDTLARMGG DEFTIALTGD GHQRDYAMIA
NRILETLRRP FTLEGGHEVL IGSSIGITLF PNDAEDVDTL LRNADTAMYR AKASGRNAFQ
FFTEEMNREI QSHLDLENAL RRAVRAMDLT IHYQPVVDSA TLAVVSAEAL VRWPLADKGF
IPPSRFIPVA EELGLIDEIG GWVLWNACTQ AKVWQAQGAK AFRVSVNVSW RQLRNPDFAL
RVREALEGTG LGAAFLELEI TEGMVLRDPQ GIAPALMALS EMGVALAIDN FGSGHSSIKC
LRQFPFSILK LDRSCVADVL TSHEDAVLVE TAAIMARRLG LTVVAEGVET HAQLEFLREH
YCDLIQGYLF GRPLPPEDFA RML
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