| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A0550 |
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| Symbol | |
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| ID | 3833657 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodospirillum rubrum ATCC 11170 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007643 |
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| Strand | - |
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| Start bp | 649402 |
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| End bp | 651189 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 637824634 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_425641 |
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| Protein GI | 83591889 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.492764 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGCCGC CCCCCGCCCC GAACCCGATC CGCGATAGCC TGATCGCCCG CGCCGATGCC
CTGCGCGAGG GCGGCGCCCC GGCCGAAGCC CGCGATCTCT ATCGTCTGGT GCTCGACCGC
CACCCCGGCC ACGGACCGGC CCTGGCCGGT CTTGGCCGCA TTCTGCTTGG CCTTGGCCAA
CCGACGGCGG CCCTTGAAAG CCTGGGCGCG GCGGTGGCTG CCGATCCGAC GCGGCTGGAC
TGGCTGGCCG ATCTGGCCGT CGCCCTGGCC GGGGCGCGCC GTCCGGCCGA AGCCCTGAGC
GCCGCCGAGG GTCTTCCCGC CACCGCCGGC GCCTTGGGCT TTCGCGCCGA CCGCCTGGAG
GAGCTTGGCC GGCGCGACCA AGCCATCGCC CTGCTCGACG ACGCCCTTCG CCGTCACCCC
GACGAGGCGG AATTGCACCG CCGCCAGGGG GTGCTGCTGC GCCGGGCCGG CCGCGCCGCC
CAGGCCATCG CTCCTTGGCG GGCGCTGGTG GCGCTTCGCC CCGGGGATGC CGCGGCGTGG
TCGAGCCTGG GGGCCGGCCT GGGCGAGAGC GGCCTTGACG AAGAAGCCGA GAAGGCCTTG
CGCCGGGCCG TCGCCCTGGC CGCCGACGAA CCCGATTGGA CCTATAACCT CGCCCATTTC
CTGATCGAGC GCGACCGGCT GGAAGACGCC CTGCCCTTGC TGGACGCCGC CGTCGCCCGC
GCCCCCGAAC GGGCCCATTA TCACACCAAC CTTGGGGTTT GCCGGCTGGG ATTGGGCGAT
ATCAAGGGGG CGATCGCCGC CCACCGCCAA GCCCTAGCCC TTGATCCCGA CGAGCCGGAG
GCCCGCTATG ATCTGGCCTG GGCCCTGCTG CTAGCCGGCG CCTGGGAGGA AGGCTGGGCC
GCCCATGAGG CGCGCTGGCG GATGGGCCGC TTCACCGGAC GCCGCGCCGC CGGCCCCGCG
CCGACCGACT GGCCGATGCC GCTGTGGGAT GGCCAACCGT TGGGCCCCGG GCGCACCTTG
TTGCTCCATG CCGAACAGGG CTTCGGCGAT AGCCTGATGA TGAGCCGGCT GATCATCCCC
GCCCTGGCCC GCGCCGGCGA CGCGCAAGGC ATTATCGAGT GCCCGCCGTC TTTGGTCGGC
CTGCTCGCGC AATCCTTGGG ACCGGCCCTG GGACCGGCGG TGCGAGTCGT CGCCCAGGCC
GAGTCTCCCC CCGCCGCCGA TGCCCATCTG CCCTTGATGT CGCTGCCCCA CCGCTTAGGC
GTCGACAGCG AGACCATCCC TGGCCCCGAC CGCTGGCTCC GGGCCGAGCC GGCACCGCGC
CCGCCCTCCT CCCCCCCCCG GGTGGGACTG GTCTGGGCCG GCGATCCGGG CAATCGCATG
GACAGGCTGC GCAGTTGTCC GGCGACCGCG CTGCGCCCCT TGTTCGATCG GGTCAAAGAC
GCCGGGTTGG ATATCGCCTG GACGGGACTA CAACTCGGCC CGCCAGCCGC CGATCTGCCC
GATTTGCCCG CGGCGCTAGC GCCGGGCGGC GATTTCGCCG CCACCGCCCG CGTCGTCGCC
GCCCTTGATC TGGTGATCGG CGTCGATACC GCCGTGATCC ATCTCGCCGG CGGCCTGGGC
GTGGAAACCT GGGTGATGCT GGCCTATGTG CCCGATTACC GCTGGATGAT GGACCGCGAC
GACAGCCCCT GGTACCCCTC GGCGCGGTTG TTCCGCCAAT CCCGTCGCGG CGACTGGCGG
GGAGTCATCG CCCAAGTGGC CGCGGCCTTG ACCAAGCGTT TCGGATAA
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| Protein sequence | MSPPPAPNPI RDSLIARADA LREGGAPAEA RDLYRLVLDR HPGHGPALAG LGRILLGLGQ
PTAALESLGA AVAADPTRLD WLADLAVALA GARRPAEALS AAEGLPATAG ALGFRADRLE
ELGRRDQAIA LLDDALRRHP DEAELHRRQG VLLRRAGRAA QAIAPWRALV ALRPGDAAAW
SSLGAGLGES GLDEEAEKAL RRAVALAADE PDWTYNLAHF LIERDRLEDA LPLLDAAVAR
APERAHYHTN LGVCRLGLGD IKGAIAAHRQ ALALDPDEPE ARYDLAWALL LAGAWEEGWA
AHEARWRMGR FTGRRAAGPA PTDWPMPLWD GQPLGPGRTL LLHAEQGFGD SLMMSRLIIP
ALARAGDAQG IIECPPSLVG LLAQSLGPAL GPAVRVVAQA ESPPAADAHL PLMSLPHRLG
VDSETIPGPD RWLRAEPAPR PPSSPPRVGL VWAGDPGNRM DRLRSCPATA LRPLFDRVKD
AGLDIAWTGL QLGPPAADLP DLPAALAPGG DFAATARVVA ALDLVIGVDT AVIHLAGGLG
VETWVMLAYV PDYRWMMDRD DSPWYPSARL FRQSRRGDWR GVIAQVAAAL TKRFG
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