Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rru_A0493 |
Symbol | |
ID | 3834022 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodospirillum rubrum ATCC 11170 |
Kingdom | Bacteria |
Replicon accession | NC_007643 |
Strand | + |
Start bp | 578808 |
End bp | 580331 |
Gene Length | 1524 bp |
Protein Length | 507 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637824578 |
Product | phytoene desaturase |
Protein accession | YP_425585 |
Protein GI | 83591833 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
TIGRFAM ID | [TIGR02734] phytoene desaturase |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.145536 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACTCC ACCCAGCGCC TACCGTGCCG ACACAAGACC GTCGGCCCCA TGCGGTCGTG ATCGGAAGCG GGTTCGGCGG GCTTGCCGCC GCGGTGCGTT TGGGAGCCCG GGGGTACAGG GTGACCGTTC TGGAAAAGCT GGGGGGACCG GGCGGTCGCG GCGGGGTGTT CAAGCAAGAC GGCTTCACCT TCGATGCCGG TCCGACCATC GTCACCTTGC CCAGCCTGTT CGAAGAGCTG TGGACCCTGT GCGGACGCCA GATGTCCGAC GATGTCGACC TGCGGCCGTT GACACCTTTT TATACGATTC GCTTCAACGA CGGCGAGACC TTCCGCGCCC AATCCGATCC CGAGGCCATG CGCGCCGAGG TCGCCCGCTT GTCGCCCGGC GATGTCGAGG GCTACGAGCG CTTCATCGCC GAAAGCGAGG ATATCTATAA GGTCGGCTTC GAGCAGATGG CCGACAAGCC GTTCTCGTCG ATCACCGACA TGCTGAAGGT GGTGCCCCAG ATGCTCAAGC TGGGCGCCCT GCGCTCGGTC TGGGGCCATG TCGCCAAGCA TGTCGCCGAT CCGCGCCTGC GCATCGCGCT GAGTTTCCAT CCGCTGTTCA TCGGCGGTAA CCCGCTGAGC GTGACCTCGA TCTATTCGAT GATCGCCTTT CTTGAACGGC GCTGGGGCGT GCATTTCGCC ATGGGCGGCA CCCATAGCTT GGTCAAAGGG CTGGTCGGGC TGATCGAAGG CCAGGGCAAT CACCTGCGCT ATAACGCCGG CGTCGCCGAG ATCTTGGTGA AGAACGACCG GGCCTGCGGC GTGCGGCTGG AGACCGGCGA GGAGATCGCC GCCGATATCG TCGTCTCCAA CGCCGATTCC GCCGCCACCT ATAAAAACCT GCTGCCCGCC GCCCATCGCC GCTGGTGGAG CGACCGGCGG CTGGCGTGGT CGCGCTATTC GATGAGCCTG TTCATCTGGC ATTTCGGCAC CAAGGGCACC TATCCCGATG TCGCCCATCA CACCATTCTG ATGGGGCCGC GCTATCACAC GCTGATCGCC GATATCTTCC AGGCCAAGAC CCTGGCCAAG GATTTCAGCC TCTATCTCTA TCGCCCCACC GCCACCGACC CGTCGATGGC GCCCGAAGGC TGCGATTCCT TTTACGTGCT GTCGCCCGTG CCCCATCTGG GTGGCGGTCA GGATTGGGCG CTTGAAGCAG AACCCTATCG CAAGGCGATC CTGGCCGAAC TCGAACGCAC CGTTCTGCCC GGCCTGGGGG CCAAGATCGT CACCTCGAAG GTGGTGACCC CCGTTGATTT CCGCGACGGA CTGTCCAGCC TGAACGGCGC GGCCTTCGGT CTGGAACCGG CCTTTACCCA AAGCGCCTGG TTCCGCCCCC ACAATAAAAG CGAAGAGATC GACCGGCTTT ATCTGGTTGG GGCCGGAACC CATCCCGGAG CCGGCCTGCC CGGCGTCCTG TCTTCGGCAA AAATCCTCGA TACGGTGGTG CCCGATGCCT CGGTCCTGGT CTAA
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Protein sequence | MKLHPAPTVP TQDRRPHAVV IGSGFGGLAA AVRLGARGYR VTVLEKLGGP GGRGGVFKQD GFTFDAGPTI VTLPSLFEEL WTLCGRQMSD DVDLRPLTPF YTIRFNDGET FRAQSDPEAM RAEVARLSPG DVEGYERFIA ESEDIYKVGF EQMADKPFSS ITDMLKVVPQ MLKLGALRSV WGHVAKHVAD PRLRIALSFH PLFIGGNPLS VTSIYSMIAF LERRWGVHFA MGGTHSLVKG LVGLIEGQGN HLRYNAGVAE ILVKNDRACG VRLETGEEIA ADIVVSNADS AATYKNLLPA AHRRWWSDRR LAWSRYSMSL FIWHFGTKGT YPDVAHHTIL MGPRYHTLIA DIFQAKTLAK DFSLYLYRPT ATDPSMAPEG CDSFYVLSPV PHLGGGQDWA LEAEPYRKAI LAELERTVLP GLGAKIVTSK VVTPVDFRDG LSSLNGAAFG LEPAFTQSAW FRPHNKSEEI DRLYLVGAGT HPGAGLPGVL SSAKILDTVV PDASVLV
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