| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A0064 |
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| Symbol | |
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| ID | 3834106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodospirillum rubrum ATCC 11170 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007643 |
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| Strand | - |
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| Start bp | 72940 |
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| End bp | 75003 |
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| Gene Length | 2064 bp |
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| Protein Length | 687 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637824134 |
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| Product | squalene-phytoene synthase |
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| Protein accession | YP_425156 |
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| Protein GI | 83591404 |
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| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1215] Glycosyltransferases, probably involved in cell wall biogenesis
[COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD
[TIGR03469] hopene-associated glycosyltransferase HpnB |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCCCC CCCTGCAGCT GTCGCCCTTG GCCCTGGTGG CGCTGCTGTC GCTGGCGGCC
TGGGCGGTGG TTCTTCTAAC GCGCCGGCGC TTCTGGCGCT GCGACCAGCG TTTGGGCCAG
AATACCATGG CGCCCGGCGC CGCCCCGGCC GTGGTCGCCG TCATCCCGGC GCGCGACGAG
GCCCACACCA TCGGCCAAAC CGTGCGCTCG CTGCTCAATC AAAGCTATCC CGGCCGTCTG
GTGGTGGTGG TGGTCGACGA CTCCAGCAGT GACGGCACCG CCGATGCGGC GCGGGCCGGC
GCCGCCAGCG TCTATGATGG CCCCTCGCGG CTGATCGTCG TTCCCGGCAA GCCGCTGGAA
GCGGGGTGGT CGGGGAAGCT CTGGGCCGTC CACCAGGGGC TGGAGGTCGC TGCCCAGGCG
GTTCCCGAGG CCCGCTATGT CTTGCTGACC GATGCCGACA TCGAACATAT CCCGGGCAAC
ATCGCCCGGC TGGTCGGCAA ATGCGAACGC GATGGCTTGG TGATGGCCTC GCTGATGGTC
AAGCTGCGCT GCGAAAGCGC CTGGGAACAT CTGCTGATCC CGGCCTTCAT CTTCTTCTTC
CAGAAGCTCT ATCCCTTTCC CTTGGTCAAT GATCCCGATC GGCGGGTCGC CGGCGCGGCG
GGGGGATGCA TCCTGGCCAG GCGCGAAACC CTTGACGCCA TCGGCGGCGT CGCCGCCGTG
CGCGGCGCGC TGATCGACGA TTGCGCGCTG GCCGCCCTGC TTAAGGAAAA GGGCCCGATC
TGGCTGGGAC TGGCCGGGCG GACGCGATCG CTGCGTCCCA ATGATGAGTT GGGCGATGTC
TGGCGGATGG TCGCGCGCAC CGCCTATGTC CAGCTTCACC ACTCGCCCCT GCGGCTGATC
GGCGCCGTGA TCGGCATGAC GCTGCTTTAT CTGGTGCCGC CCGTCTCCCT GATCGTCGGC
ATCCTCAGCG CCGATTTCCC CGCCGCCGTC GCCGGGCTGG TCGGCTGGAT CGGGCTGGCG
ATCATTTACC GGCCGACCCT CCATCTCTAC CGCCGTCCGC CGATGGCCGG TCTCGCCCTG
CCTTTGGCCG CCCTGCTCTA TACGCTGATG ACCATCGATT CGGCGCGGCG CCATTACGTC
GGGCGCGGCG GCGAATGGAA GGGCCGGACC TATTCGGGGG ACGCCAGCGC CGGCGCCGAT
CCCGGACCGC GCAGCCCGGC CGAGCTGGCC GCCCATGTCG AAGCGATCAC CAAGGCCTCG
GGCACCTCGT TCTATGGGGC GATGCGCATC CTGCCGCGCG AACGCCGTCT GGCGATGTAT
GCCATCTACG CCTTTTGCCG GGTGGTCGAC GATATCGCCG ACGGCACCGC CCCCGAGGCC
GAGAAGCGGG CCGAGCTGGC GCGCTGGCGC GACGAGATCG AGGCCCTTTA CGCCCGTGGC
GGCAAGGGGC CCGAGCATCC GGTGGCCCGC GCCCTTGACG GACCGATCCG CCGCTTCGCC
CTGCCGCGCG AAGACTTCCT GGCGGTCATC GAAGGGATGG AGCTTGATGC CGGCCCCCGG
GTGCGCATTC GCGACATCAC CGAGCTTGAG CAATATTGCG ACTGGGTGGC CTGCGCCGTC
GGCCGGTTGT CCAACCGCAT CTTCGGCGCC GATCCGGCGT TGTCCGACGA CGTGGCCCGC
CACACCGGGC TGGCGCTGCA GTTGACCAAC ATCCTGCGCG ACGTCGTCGA GGACGCCGAG
CGCGACCGGC TTTATCTGCC GCTCAGCCGG CTGCGCGCCC ATGGCCTGAA AACCACCAAG
GATATCGACG CCGTGCTCGT CCATCCGGCC ACGGCCAAGG TCTGCGCCGA ACTGGCGAGC
AAGGCGGCGG CCGAATTCGC CGAGGCCGAC CGCGCCCAGG CCGCCTGCGA TCGCAAGACC
ATGCGCCCGG CGATCATCAT GAAAGAGGTC TATCGCCGCA TTCATGCCGC CTTGATGGTG
CGCGGCTGGG CCCGCCTGGG CGAGCCGGTC AAGGTCTCCC GGCTGACCAA GCTCGGCATC
GCCCTGCGCC ACGGCTGGCT GTGA
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| Protein sequence | MIPPLQLSPL ALVALLSLAA WAVVLLTRRR FWRCDQRLGQ NTMAPGAAPA VVAVIPARDE
AHTIGQTVRS LLNQSYPGRL VVVVVDDSSS DGTADAARAG AASVYDGPSR LIVVPGKPLE
AGWSGKLWAV HQGLEVAAQA VPEARYVLLT DADIEHIPGN IARLVGKCER DGLVMASLMV
KLRCESAWEH LLIPAFIFFF QKLYPFPLVN DPDRRVAGAA GGCILARRET LDAIGGVAAV
RGALIDDCAL AALLKEKGPI WLGLAGRTRS LRPNDELGDV WRMVARTAYV QLHHSPLRLI
GAVIGMTLLY LVPPVSLIVG ILSADFPAAV AGLVGWIGLA IIYRPTLHLY RRPPMAGLAL
PLAALLYTLM TIDSARRHYV GRGGEWKGRT YSGDASAGAD PGPRSPAELA AHVEAITKAS
GTSFYGAMRI LPRERRLAMY AIYAFCRVVD DIADGTAPEA EKRAELARWR DEIEALYARG
GKGPEHPVAR ALDGPIRRFA LPREDFLAVI EGMELDAGPR VRIRDITELE QYCDWVACAV
GRLSNRIFGA DPALSDDVAR HTGLALQLTN ILRDVVEDAE RDRLYLPLSR LRAHGLKTTK
DIDAVLVHPA TAKVCAELAS KAAAEFAEAD RAQAACDRKT MRPAIIMKEV YRRIHAALMV
RGWARLGEPV KVSRLTKLGI ALRHGWL
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