| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A0010 |
|---|
| Symbol | |
|---|
| ID | 3833897 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | - |
|---|
| Start bp | 10527 |
|---|
| End bp | 12029 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637824079 |
|---|
| Product | RNA polymerase factor sigma-54 |
|---|
| Protein accession | YP_425102 |
|---|
| Protein GI | 83591350 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
|---|
| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.608534 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGATGT CGCCCCGTCT GGATCTTCGC CAGACTCAGT CTCTGGTCAT GACACCCCAA
CTGCAGCAGG CGATCAAGCT GCTGCAGCTG TCCAATATGG AGCTCTCGGT CTACGTCGAT
CAGGAACTCG AGCGCAATCC GCTGCTCGAG CGCGACGACT CGGCCGACGT CAGCCCCGAG
CCCGACCGCC GCGAGGAACG CGCCGACAGC GCCGAGACCC AGGTGCTCGA TGTCGTGCCC
GGCAATACCA CCGACGCGCC GCTCGACCAG GATTTCAACA CCGCCGCCGA GGAGGGGACG
CCGTCCGACA GCTGGGCCGA AGCTGGCGGC GGCTTTGACG CCGGCACCCC CTGGGGCTCG
GGAACCAGCG GCTCGTTCGA TGACAGCGAC GGCGGACTGG AACAGATGGT CGCCGGGCCG
CGGTCCTTGC GCGACCACCT GAGCGACCAG ATCACCCTTG ATCTCAAGAC CTCGGCCGAC
CGGCTGATCG CCCACCATCT GATGGGCATG CTTGATGACG CCGGCTATCT GATCGGCGCC
CTCGACGAGG TGGCCGACAG CCTGGGGTGC TCCTTGGCCG AGGTTGAACG GGTGCTGGGC
CGCCTTCAGG CGATGGACCC GCCCGGCCTC TTCGCCCGCT CGCTCAAGGA ATGCCTGGCG
ATCCAACTGG CCGACCTCAA CCGACTCGAC CCGGCGATGC AGGCGCTGCT TGACCATCTC
GAGATGCTCG GGCGGCGCGA TATCGCCGGT CTGCTCAAGA TTTGCGGAGT CGATCACGAG
GATATGATGG GGATGATCGC CGAGATCCGG GCGCTTGATC CCAAGCCGGC GCTGCGCTTT
GAAAACACCC TGACCCAGCC GGTGATCCCC GATGTGCTGA TGCGCCCCGA TCCGGCGGGG
GGCTGGCTGG TCGAACTCAA CAGCGAAACC CTGCCCCGCG TGCTGATCAA CAACCGCTAT
CACGCCCGGT TGAGCCGCAG CGGCGACAAG GAAACCCGAA CGTTCTTGTC GGAGAATCTG
GCCACCGCCA ATTGGCTGGT GAAATCCCTC GACCAGCGGG CCAATACCAT CTTGAAGGTG
GCGACCGAAC TGGTCCGCCA GCAGGACGCC TTCTTCCTGC ATGGCGTTCG TCACCTGCGG
CCGCTGATCC TGCGCGACAT CGCCGAGGCG ATCGAAATGC ACGAAAGCAC GGTCAGCCGG
GTGACCAGTA ATAAATACAT CGCTAGCCCG CGCGGTATTT TCGAGCTCAA GTATTTCTTC
ACCCAGGCGA TCGGCGCCGC CGACGGCGGA GAAAGCCATT CGGCGGAAGC GGTGCGCGAT
CGCATTCGCT CTCTGATTGA AGCTGAGAGC CCCGATCAGG TATTGTCCGA CGACAAACTC
GTCGATATCC TGCGCACCGA CGGCATCGAC ATCGCCCGGC GAACGGTGGC TAAATATCGG
GAAGGAATGC GGATCGCCTC GTCGGTGCGC CGCAAAAAGG AAAAATCGGG GCGCCTACCT
TGA
|
|---|
| Protein sequence | MVMSPRLDLR QTQSLVMTPQ LQQAIKLLQL SNMELSVYVD QELERNPLLE RDDSADVSPE
PDRREERADS AETQVLDVVP GNTTDAPLDQ DFNTAAEEGT PSDSWAEAGG GFDAGTPWGS
GTSGSFDDSD GGLEQMVAGP RSLRDHLSDQ ITLDLKTSAD RLIAHHLMGM LDDAGYLIGA
LDEVADSLGC SLAEVERVLG RLQAMDPPGL FARSLKECLA IQLADLNRLD PAMQALLDHL
EMLGRRDIAG LLKICGVDHE DMMGMIAEIR ALDPKPALRF ENTLTQPVIP DVLMRPDPAG
GWLVELNSET LPRVLINNRY HARLSRSGDK ETRTFLSENL ATANWLVKSL DQRANTILKV
ATELVRQQDA FFLHGVRHLR PLILRDIAEA IEMHESTVSR VTSNKYIASP RGIFELKYFF
TQAIGAADGG ESHSAEAVRD RIRSLIEAES PDQVLSDDKL VDILRTDGID IARRTVAKYR
EGMRIASSVR RKKEKSGRLP
|
|---|
| |