Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rru_B0040 |
Symbol | |
ID | 3833371 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodospirillum rubrum ATCC 11170 |
Kingdom | Bacteria |
Replicon accession | NC_007641 |
Strand | + |
Start bp | 40773 |
End bp | 42251 |
Gene Length | 1479 bp |
Protein Length | 492 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637824059 |
Product | Type I secretion membrane fusion protein, HlyD |
Protein accession | YP_425076 |
Protein GI | 83582770 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0639189 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCTCGT CTAGCCTCAC CCCCCAAGCC ATCGTCCCCC CGCCCGAGGC CCGGCCGCCG GCCGAGCCCC CGGCGCCCCC CGCCCCGTCG ACGACGGCGC CGGCCCAAAC GCCGGCCAAG GCATCGGCCA AGATGCCGGG CGACACCACG CCGGCGCGCT GGACCGAGGG GATGCTGTCC ATTCCCAAGG TCGTGACCGA TTCGCGCCAG ACGATCAGGG CGGGCTGGTT GATCATCCTG GTCGCCTTTG GCGGCCTCGG GCTGTGGGCG GCGACGGCGC CGCTGTCAAG CGCCGTGGGC GCCCCGGGCA CCATCGTTGT TGAAAGCAAC CGCAAGACCG TTCAGCACCT TGAAGGCGGC ATCATCAAGG AAATTCTGGT CAAGGAAGGC GACCGGGTGC ACCAGGGCGA TCCGCTGATC CGCCTGGAAA CCACCCAGGC CCTGGCCAGC GCGGCGGTGG TCAGCAATCA GTTTGAAACC TATCAGGCCC TGGAGGCCCG CCTTGTCGCC GAACGCGACG AGCAAAAGAC CATCACCTTC CCCCCCGATC TGATCGCCGT CGCCAAGCTC AAGCCGGAAA CGGCGGAAAT CCTTCAGGCC CAGCAGCAGC AGTTCGATGA GCGCCATAAG TCGATCGAAG GCCAAGTCGC CATCTTGCAA AAGCGCATCG CCCAAAGCCG CCAGGAGATC GAAGGGCTGA AGGTTCAGCG CCAATCCAAG AAGCGCCAGC TTGAAATCTT CCAAGACGAA ATCGTCGGCC TGCGCGAATT GCTGGCCAAG GGCTATACCC CGCGCACCCG CATCCTGGCG ATGGAACGGG AAATGACCCG GCTGGAAGGC GAGGTCGGCA CCGATACCTC GTCGATGGCG CGAGCCGAAC AAGCGGTTGG CGAAGCGGAA CTGCAGATCA TCCAGACCCG CCAGCAATTC CGCGAAGACG TCGTCGGCCA GCTGCGCGAG GTCCAGACCA AACTGTCGGA ACTGCGCGAA CGCGGCACGG TGGCGACCGA TGTGCTGAGC CGAACCGTCC TCCTCGCCTC GCAGGCAGGG GTGATCCAGA ACCTCGCGGT TCATACCCTG GGCGGCATCA TCAAACCCGG TGAAACGCTG ATGGAGATCG TGCCCGAAGA CGATCGCCTA GTCATCGAGG CCCAGATTTC GCCGCGCGAC ATCGACAATG TCGTTCCCGG CATGGACACC GAAGTGCGGT TCTCGGCCTT CAATTCCCGC ACCATCCCGA TCATCGACGG GGTGCTGTCC CAGGTTTCGG CCGACCGTTT CGTCAACGAG CGCGATAGCT CATCTTATTA CAAGGCGCGG ATCGAGGTCT CGGACGAGGA ACTGGCCAAG CTGGGCGGAC TGGCCCTGCG CGCCGGCATG CCCGTCGACG TGATGATCAA AACCGGCGAG CGCACCGTTC TTCACTACTT CCTCAAGCCC CTGGAAGACG CCCTGTTCCA CGGTTTGATC GAGGAGTAA
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Protein sequence | MTSSSLTPQA IVPPPEARPP AEPPAPPAPS TTAPAQTPAK ASAKMPGDTT PARWTEGMLS IPKVVTDSRQ TIRAGWLIIL VAFGGLGLWA ATAPLSSAVG APGTIVVESN RKTVQHLEGG IIKEILVKEG DRVHQGDPLI RLETTQALAS AAVVSNQFET YQALEARLVA ERDEQKTITF PPDLIAVAKL KPETAEILQA QQQQFDERHK SIEGQVAILQ KRIAQSRQEI EGLKVQRQSK KRQLEIFQDE IVGLRELLAK GYTPRTRILA MEREMTRLEG EVGTDTSSMA RAEQAVGEAE LQIIQTRQQF REDVVGQLRE VQTKLSELRE RGTVATDVLS RTVLLASQAG VIQNLAVHTL GGIIKPGETL MEIVPEDDRL VIEAQISPRD IDNVVPGMDT EVRFSAFNSR TIPIIDGVLS QVSADRFVNE RDSSSYYKAR IEVSDEELAK LGGLALRAGM PVDVMIKTGE RTVLHYFLKP LEDALFHGLI EE
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