Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MCAP_0712 |
Symbol | ligA |
ID | 3829023 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Mycoplasma capricolum subsp. capricolum ATCC 27343 |
Kingdom | Bacteria |
Replicon accession | NC_007633 |
Strand | - |
Start bp | 825742 |
End bp | 827748 |
Gene Length | 2007 bp |
Protein Length | 668 aa |
Translation table | 4 |
GC content | 23% |
IMG OID | 637823864 |
Product | DNA ligase, NAD-dependent |
Protein accession | YP_424672 |
Protein GI | 83319601 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAAAAG AACAAATTCT ACTAAGAATT AATCAATTAA AAGAACAGTT AAACTTATGA TCAAAACAAT ATTATGTTGA TGATAACCCA AGTGTTGATG ATACTGAATA TGATTTAGCT TTAAAAGAAC TAATTAGTTT AGAAAATTTA TATCCTGAAT TTATTACTAG TGATTCACCT AGTCAAAAAG TTGGTGGAAC AGTTAGTGAA AAGTTTTTAA AAATAACTCA TAAAACACCA ATGTTAAGTT TAGGTAATGT TTTTAATTTT GATGAATTTT TAGAATTTAA TACTCAAGTA AGTAAAGTTT CAAATAATTT AAATAATGAA TATGTAGCTG AATTAAAAAT TGATGGTTTA TCAATTTCAT TAGTTTATGA AAATGGAGTT TTAGTATCAG CTGCTACTAG AGGTAATGGA GTAATTGGTG AAGATGTTAC TACTAATGTA AGAACTATTA AATCCATTCC TTTAAAAATT AGTAAAAAAG AACGTGTTGA AGTTAGAGGA GAAATTTATT TATCTAAAGC TGAGTTTGAA AAAATCAATC AAAAAAGATT ATTAAATAAT GAAGATTTAT TTATAAATCC AAGAAATGCA GCTGCTGGTA CTTTAAGACA GTTAGATTCA AAAATAGTTG CAAGTAGAAA TCTTGATGCT TTTTTATATT ATTACATTAG TGATGATTCA CCTAATCTTA ATCAATATGA ATCTATTTTA AAACTAAATC AGTTAGGTTT TAAAACTAAT AAAGAAACAA TGTTATGTAA AAATTTAGAT CAAATTAAAG CATATATTGA TAAATATACT AATTTAAAAA ATGATTTAGA TTATCAAATT GATGGAATTG TATTTAAAAT TAATGATAAA AATTTACAAA ATAGTTTAGG ATTCACTAGT AAGATTCCAA AGTGAGCAAT TGCTTATAAG TTTCCAGCTG AAATCAAGCA AACTAAACTA TTAGATATAT TTGCTACAGT TGGAAGAACT GGAAAAATTA CTTATAATGC TAAACTTGAG CCTGTTTTTT TAATGGGAGC TACAATTAGT GCTGCTACTT TAAATAATGC AGAATATATT AAGTCAAAAG ATTTAAGAAT TAATAGTATA GTTAAAATAA AAAAAGCTGG AGATGTTATT CCAGAAGTTA TTGAAGCTAT TAAAGATGAA ACTTTTTATA ACTTAGAAGT TTTTCAACCT ATATTATATT GTCCAAATTG TCATTCTTTA TTAGAAAAAA ATGAAAATGA AGTTGATCAG TTTTGTATAA ATTCTTCTTG TTCTATGAAA ATATTAAGAT CATTACAACA TTTTAGTAGT AGAGAAGCTA TGAATATTGT TAGTTTAGGA GATAGAAGTT TAGAAATTTT ATTTAATTTA GAAATTATTC AAAATATTTC AGATATTTAT AAGTTAGAAG AATATAAAGA TCAGATTTTA GCAATTGAAA ATTTTGGTTT AAAAAGCTAT TTAAATTTAA TTGATTCAAT TAATATGTCT AAAAACAATT CTTTAGAAAA AGTTTTATTT GGTTTAGGAA TTAGACATAT TGGAAGTAAA ACTGCAAAAA TTTTAGCTAG AAAATATCAA AATATAGATA ATTTAATGAA AGCTAGTTAT GATGAATTAA TTCAAATAAA TTCAATTGGA GAATCATTAG CTTTATCTAT TATTGATTGA TTTAAAATAG AAGATAATTT AAAACTAATT AATGAGCTAA AATCATTTAA CATCAATTTT AATTATTTAG GAGCAAAAAT TAATTCTGAT TCAATAATTG CTAATAAAAC ATTTGTAATT ACTGGAACTT TAACAAGACC AAGAGAAGAA TTTAAAACAT TAATTGAAAA TAATGCTGGT AAGATAAGTG GTTCAATTTC TAAACAAACT GACTATTTAT TAGCTGGTAA TAATGTGGGT TCTAAACTAG AAAAAGCAAA AAAATTAGGT GTTATAATTA TAGATGAACA ACAGTTTTTT GATTTATTAA AATCAGAGAA AGGATAA
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Protein sequence | MSKEQILLRI NQLKEQLNLW SKQYYVDDNP SVDDTEYDLA LKELISLENL YPEFITSDSP SQKVGGTVSE KFLKITHKTP MLSLGNVFNF DEFLEFNTQV SKVSNNLNNE YVAELKIDGL SISLVYENGV LVSAATRGNG VIGEDVTTNV RTIKSIPLKI SKKERVEVRG EIYLSKAEFE KINQKRLLNN EDLFINPRNA AAGTLRQLDS KIVASRNLDA FLYYYISDDS PNLNQYESIL KLNQLGFKTN KETMLCKNLD QIKAYIDKYT NLKNDLDYQI DGIVFKINDK NLQNSLGFTS KIPKWAIAYK FPAEIKQTKL LDIFATVGRT GKITYNAKLE PVFLMGATIS AATLNNAEYI KSKDLRINSI VKIKKAGDVI PEVIEAIKDE TFYNLEVFQP ILYCPNCHSL LEKNENEVDQ FCINSSCSMK ILRSLQHFSS REAMNIVSLG DRSLEILFNL EIIQNISDIY KLEEYKDQIL AIENFGLKSY LNLIDSINMS KNNSLEKVLF GLGIRHIGSK TAKILARKYQ NIDNLMKASY DELIQINSIG ESLALSIIDW FKIEDNLKLI NELKSFNINF NYLGAKINSD SIIANKTFVI TGTLTRPREE FKTLIENNAG KISGSISKQT DYLLAGNNVG SKLEKAKKLG VIIIDEQQFF DLLKSEKG
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