| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmul_A2069 |
|---|
| Symbol | rpsA |
|---|
| ID | 3784387 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosospira multiformis ATCC 25196 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007614 |
|---|
| Strand | - |
|---|
| Start bp | 2359041 |
|---|
| End bp | 2360756 |
|---|
| Gene Length | 1716 bp |
|---|
| Protein Length | 571 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637812158 |
|---|
| Product | 30S ribosomal protein S1 |
|---|
| Protein accession | YP_412755 |
|---|
| Protein GI | 82703189 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000607618 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTACTG TTTCCCCCGC TGTCGACTCT TCTGAAAGTT TCGCAGCGTT ATTTGAAGAA
AGCCTTTCCC GTCAGGAAAT GCGTATCGGT GAAGTCATCA CCGCGCAGGT CGTCCGGGTC
GATTACAACA TCGTAGTCGT AAACGCCGGG CTCAAATCAG AGAGTTTCAT CCCCGTCGAC
GAGTTCAAGA ACGACAAGGG CGAAGTTGAA GCCAAGCCCG GCGATTTTGT CAGCGTCGCC
ATCGAGGCGC TGGAAGATGG CTATGGCGAA ACCCGCCTGT CACGGGACAA AGCAAAGCGC
CTTACCGCCT GGCATGACCT GGAGGCTGCA ATGGAAAGCG GCGCCATCGT ATCGGGTGTC
GTGAGCGGCA AGGTCAAAGG TGGATTGACT GCCATGATCA ATGGTATTCG CGCCTTTCTG
CCCGGCTCGC TGGTGGATAT CAGGCCGGTC AAGGATACGA CTCCTTACGA AAACAAGGAG
ATGGAATTCA AGGTTATCAA ACTTGACCGG AAGCGAAACA ACGTGGTGGT ATCTCGCCGT
GCAGTGCTGG AAGAAACCCA GGGGGCTGAC CGCCAGACGT TGCTCGCCAA TCTGACCGAA
GGCGCGATCG TCAAGGGTAT TGTCAAGAAT ATTACCGATT ACGGCGCATT CGTGGATCTG
GGGGGCATAG ACGGCTTGCT GCACATTACC GATCTTGCGT GGCGGCGGGT AAAGCACCCC
TCCGAGGTCA TCAGTGTCGG TGATGAAGTA ACCGCGAAAG TCCTCAAATT CGATCAGGAA
AAAAACCGCG TTTCACTGGG TATGAAGCAA TTGACGGAAG ATCCATGGGT AGGATTGTCG
CGGCGGTATC CGCCCCATAC CCGCTTGTTC GGCAAGGTCA GCAACCTTAC CGATTACGGC
GCGTTTGTTG AAATCGAGCA AGGCATTGAA GGCCTCGTGC ATGTCTCCGA AATGGATTGG
ACCAACAAGA ACGTGTACCC GTCCAAAGTT GTGCAATTGG GCGATGAAGT AGAAGTGATG
ATTCTTGAGA TCGATGAAGA GCGGCGTCGC ATTTCGCTCG GCATGAAGCA GTGCAAAGTG
AATCCCTGGG AAGATTTCGC CATGAATCAT CAAAAAGGCG ACAAGGTGCG AGGTCAGATC
AAATCCATTA CGGATTTCGG CGTCTTTATC GGGCTGCAAG GCGGGATAGA CGGACTGGTG
CATCTTTCCG ATCTTTCCTG GAATCAGCCG GGGGAAGAAG CCGTGCGCAA TTACAAGAAG
GGTGACGAGG TCGAGGCGGT CGTGCTGTCC ATCGATGTGG AGCGCGAGCG CATCTCGCTT
GGCATCAAGC AATTGGAAGG CGATCCCTTC AACAGCTTTG TCTCGGTGCA TGACAAGAAC
AGTATTGTCA AAGGGACGGT AAAGTCGATT GATGCGAAGG GCGCCGTGAT TTCACTCGAG
AATGATGTCG AAGGCTACCT GCGCGCGTCA GAAGTGTCGC GCGACCGGGT TGAGGACATT
CGTTCCCACT TGAAGGAAGG TGATGTGGTT GAGGCGATGA TCATTAACGT CGATCGCAAA
AATCGCGGCA TTAACCTTTC GATCAAGGCG AAGGATATGG CGGAGGAATC CGACGCGATG
CAGAAGGTGG CAGGCGACGC ATCCGCCAGC GCGGGAACCA CCAGTCTGGG TGCTTTGCTC
AAGGCCAAGA TGGATGTTAA GAATACGGAA CAATAA
|
|---|
| Protein sequence | MATVSPAVDS SESFAALFEE SLSRQEMRIG EVITAQVVRV DYNIVVVNAG LKSESFIPVD
EFKNDKGEVE AKPGDFVSVA IEALEDGYGE TRLSRDKAKR LTAWHDLEAA MESGAIVSGV
VSGKVKGGLT AMINGIRAFL PGSLVDIRPV KDTTPYENKE MEFKVIKLDR KRNNVVVSRR
AVLEETQGAD RQTLLANLTE GAIVKGIVKN ITDYGAFVDL GGIDGLLHIT DLAWRRVKHP
SEVISVGDEV TAKVLKFDQE KNRVSLGMKQ LTEDPWVGLS RRYPPHTRLF GKVSNLTDYG
AFVEIEQGIE GLVHVSEMDW TNKNVYPSKV VQLGDEVEVM ILEIDEERRR ISLGMKQCKV
NPWEDFAMNH QKGDKVRGQI KSITDFGVFI GLQGGIDGLV HLSDLSWNQP GEEAVRNYKK
GDEVEAVVLS IDVERERISL GIKQLEGDPF NSFVSVHDKN SIVKGTVKSI DAKGAVISLE
NDVEGYLRAS EVSRDRVEDI RSHLKEGDVV EAMIINVDRK NRGINLSIKA KDMAEESDAM
QKVAGDASAS AGTTSLGALL KAKMDVKNTE Q
|
|---|
| |