| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmul_A1401 |
|---|
| Symbol | |
|---|
| ID | 3786431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosospira multiformis ATCC 25196 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007614 |
|---|
| Strand | + |
|---|
| Start bp | 1597609 |
|---|
| End bp | 1599714 |
|---|
| Gene Length | 2106 bp |
|---|
| Protein Length | 701 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637811489 |
|---|
| Product | glycogen debranching protein GlgX |
|---|
| Protein accession | YP_412096 |
|---|
| Protein GI | 82702530 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
|---|
| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCT GGCCAGGCAC TCCCTACCCC CTTGGTGCGA CATACGATGG AGCGGGAACC
AATTTCTCCC TGTTTTCCGA GGCGGCGGAA CGCGTCGAAC TATGCCTGTT CGATGAAGCC
GGTCGTGAAA CCAGGGTGAA TTTGCCCGAG GTGACAGGAT ACTGCTGGCA CGGCTACCTG
CCGGGCGTAG AGCCTGGACA GCGTTACGGT TTTCGGGTGC ATGGGCCGTG GTCCCCGGAG
CAAGGTAATC GCTGTAATTC CGCGAAGCTG CTGCTCGATC CGTATGCAAA AGGGATCGAT
GGCGACATTA CCTGGGATGA AGCTGTATTC CCCTATCTTT TCGATGACCG CGATGCACGG
AATGACAAGG ATAGCGCGCC TTTCATGCCC CGCAGCATCG TTCATCAGCC GTTTTTCGAT
TGGTCCGGCG ATCGTCAACT CCAGCGCCCC TGGCACGAAA CAGTCATTTA TGAGTTGCAT
GTCAAGGGCT TCACCGCACA GCATCCCGAC ATACCCCCTG AACTGCGGGG CACTTATGCG
GGGCTCGCAC ACTCTGCCTC TATCGATTAT CTGAAACAGC TTGGGGTCAC GGCTGTCGAG
CTGTTGCCAG TGCACTACTT TGTGCAGGAC AAACATCTCC TGGATCAGGG TTTGCGCAAC
TACTGGGGTT ATAACTCCAT TGCCTATTTT GCTCCCCATA GCGCCTACGC CGCGGACAAG
CGTCCGGGAG CCGCAAGCGC CGAATTCAAG CAAATGGTCA AGGCCCTGCA TCAAGCCGAC
ATAGAAGTTA TCCTCGATGT GGTGTACAAC CATACTGCGG AAGGCAACGA TCTCGGGCCG
GTGTTATGCC TGAAGGGAAT CGACAACGCC TATTATTACC AGCTCATGGA AGATCGGCGC
TACTACAGGG ATTACACAGG CACAGGCAAC TGCCTCAATA TGAGGCAACC GCATGTGCTG
CAACTGATCA TGGATTCGCT TCGCTATTGG GTTCTGGAAA TGCACGTCGA TGGCTTCCGC
TTCGATCTCG CATCCGCGCT CGCACGCGAA CTCCATGAAG TGCAAATGCT GAATGCATTT
TTCAACATTA TCCAGCAGGA TCCTGTTACA AATCAGGTCA AGCTGATCGC GGAACCCTGG
GACCTGGGGG AAGGCGGTTA CCAAGTGGGG AAATTCCCGT CAGGCTGGTC TGAATGGAAC
GGCAAGTACC GGGACTGTAT CCGCAATTTC TGGCGCACCC AGGAACCTAC TTTAAGTGAA
TTCGCTTATC GCTTTACCGG AAGCTCAGAC CTTTACGAGG GGAATTCGCG TCATCCTTTT
GCAAGCATCA ATTTTGTCAC CTCGCACGAC GGTTTCACAT TGCGGGATCT TGTCTCCTAT
AACGAAAAAC ACAACCTGGC CAATGGCGAG GACAACAGGG ATGGCACTGA CGACAACCGT
TCCTGGAACT GCGGTGTCGA AGGGCCTACG GATGACATGG AAGTGCTTAC GCTTCGCGCC
CGGCAGCAGC GCAATTTTCT GGCTACCCTG GTATTGTCTC AGGGCGTGCC CATGTTGCTG
GCAGGGGATG AATTGGGTCG CACCCAGCAG GGAAACAATA ATGCGTACTG CCAGGACAAC
GAAATTTCCT GGGTGGATTG GGGGAAGGTG GATACCGGTT TACAGGAATT CACCAGACGC
CTTGCTCGCT TCCGCCGTGA TCACCCGGTC TTCCGCCGAC GCCGGTGGTT TCAGGGGCAA
CCCATTCACG GTGGGGGCCA GGACGATATT GCGTGGTTCA ATTACATGGG AGAACAGGCG
AGCGAGGAAT TATGGGGGAA TGGGGGAATT CAAAGCCTGG GAATTTTTCT CAACGGAGAC
AGTTTCCCGA ATCCCAATGC TCGAGGGGAG CCGGTAAAGG ATGACAGCTT CTACCTGATT
TTCAACGCAC ATTTCGAGCC GATCGATTTC GTCCTGCCCC CCAACCACTG GGGGCTACGC
TGGTTGAGAA TACTCGACAC CAACGAGGGC TGGGTAGAGA ATGCAGCGGA TCAGCCCGGG
CTCGAAGCCG GATCCGCTTT GTCAGTCGCC GCCCGGTCAC TGGTGCTTTT GCAGCGGCAG
GCATGA
|
|---|
| Protein sequence | MKIWPGTPYP LGATYDGAGT NFSLFSEAAE RVELCLFDEA GRETRVNLPE VTGYCWHGYL
PGVEPGQRYG FRVHGPWSPE QGNRCNSAKL LLDPYAKGID GDITWDEAVF PYLFDDRDAR
NDKDSAPFMP RSIVHQPFFD WSGDRQLQRP WHETVIYELH VKGFTAQHPD IPPELRGTYA
GLAHSASIDY LKQLGVTAVE LLPVHYFVQD KHLLDQGLRN YWGYNSIAYF APHSAYAADK
RPGAASAEFK QMVKALHQAD IEVILDVVYN HTAEGNDLGP VLCLKGIDNA YYYQLMEDRR
YYRDYTGTGN CLNMRQPHVL QLIMDSLRYW VLEMHVDGFR FDLASALARE LHEVQMLNAF
FNIIQQDPVT NQVKLIAEPW DLGEGGYQVG KFPSGWSEWN GKYRDCIRNF WRTQEPTLSE
FAYRFTGSSD LYEGNSRHPF ASINFVTSHD GFTLRDLVSY NEKHNLANGE DNRDGTDDNR
SWNCGVEGPT DDMEVLTLRA RQQRNFLATL VLSQGVPMLL AGDELGRTQQ GNNNAYCQDN
EISWVDWGKV DTGLQEFTRR LARFRRDHPV FRRRRWFQGQ PIHGGGQDDI AWFNYMGEQA
SEELWGNGGI QSLGIFLNGD SFPNPNARGE PVKDDSFYLI FNAHFEPIDF VLPPNHWGLR
WLRILDTNEG WVENAADQPG LEAGSALSVA ARSLVLLQRQ A
|
|---|
| |