Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nmul_A0871 |
Symbol | prpD |
ID | 3784441 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosospira multiformis ATCC 25196 |
Kingdom | Bacteria |
Replicon accession | NC_007614 |
Strand | + |
Start bp | 989317 |
End bp | 990768 |
Gene Length | 1452 bp |
Protein Length | 483 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637810953 |
Product | 2-methylcitrate dehydratase |
Protein accession | YP_411566 |
Protein GI | 82702000 |
COG category | [R] General function prediction only |
COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000221374 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCATCCG CGTCCTCCCA CATTCGTCCC CAGCCTGACC AGGTTCTGGT CGACATTGCA GATTATGTGG TGGGACGGGA TATTCAAAGC GATCTGGCTT ACGCTACCGC CCGTCACTGC CTGATGGATT CCCTGGGGTG CGCCATGGAA GCGCTTGCGT ATCCGGCCTG CACCAAGCTG CTTGGGCCGC TCGTGCCCGA GGCTGCCGAA TCTGAGGGCG GCGCGAGGAT TCCGGGTACC CAGTTTCAGT TCAATCCGGT GGAAGCGGCA TTCAATATCG GCACGATGAT TCGCTGGCTC GATTTCAACG ATACCTGGCT GGCTGCGGAA TGGGGTCATC CATCGGATAA CCTGGGGGCC ATACTGGCTG TAGCCGACTG GCTTTCGCGC AGTGCCACGA GCGGGAGGCG GCGGCCGCTT ATGCGCGATG TGTTGACCGC GATGATAAAG GCATACGAGA TCCAGGGTTG CTTCGCTTTG GAAAACAGCT TCAACAGGGT GGGCCTGGAT CATGTGGTGC TGGTTAAAGT TGCCTCCACA GCCGTCGTAA CGCATCTGCT GGGCGGCAGC CGTAAACAGA TCGTCGATGC GCTTTCCCAG GCGTGGGTGG ACGGGCAGGC ACTTCGCACG TATCGTCATG CCCCCAACAC CGGCTCGCGC AAATCCTGGG CTGCGGGGGA TGCCACCAGT CGTGCGGTAT GGCTTGCGCT GATCACACTC AAGGGGGAGC CAGGCTATCC TTCAGCGCTT ACCGCGAAAA CCTGGGGGTT CTACGATGTG CTGTTCAAGG GAGAACCTTT CAAATTCCAG AGGCCCATCG AACGATGGCA TTCCTATGTA ATGGAGAATG TGCTGCTCAA GATTTCGTTC CCCGCCGAAT TCCACTCCCA GACAGCGGCG GAGTGTGCGA TGCAGCTATA CCCGCACGTG AAGGACCGGA TTGCCGATAT CCGGAAAATA ACGATCCGCA CCCACGAGGC CGCGATTCGT ATCATCGACA AGAAGGGGCC GCTCAGCAGC CCGGCCGACC GCGACCATTG CATGCAGTAT ATCGTGGCAG TGGCCCTTAT TTTCGGCAGG CTTACCTCTG CCGATTATGA GGATGGCGTG GCCGCCGACC CTCGCATAGA TGCGTTGCGG GACAAGATAA TCTGTATTGA GGATCCGTGC TTCACAAAGG ATTATTACGA TCCCGAAAAA CGCTCCATCG CAAACGGTCT CACCCTTGAA TTCAGGGACG GCAGTAAACT GGAGGAAGTG GTGGTGGAGT ATCCCATCGG CCACAGGTTG CGTCGAAGCG AAGGCATTCC GCTACTGGAA GAAAAATTTA GAATCAATCT TGGGCGGCGT TTCCCCGCCC AGCAGTGCGA GGCAATCATG AATGCCTGTC ATGATCAAGG CAGGCTGGAA GCAATGCCGG TTCACGAGTT TATCGATCTG TTTGTGATTT AG
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Protein sequence | MSSASSHIRP QPDQVLVDIA DYVVGRDIQS DLAYATARHC LMDSLGCAME ALAYPACTKL LGPLVPEAAE SEGGARIPGT QFQFNPVEAA FNIGTMIRWL DFNDTWLAAE WGHPSDNLGA ILAVADWLSR SATSGRRRPL MRDVLTAMIK AYEIQGCFAL ENSFNRVGLD HVVLVKVAST AVVTHLLGGS RKQIVDALSQ AWVDGQALRT YRHAPNTGSR KSWAAGDATS RAVWLALITL KGEPGYPSAL TAKTWGFYDV LFKGEPFKFQ RPIERWHSYV MENVLLKISF PAEFHSQTAA ECAMQLYPHV KDRIADIRKI TIRTHEAAIR IIDKKGPLSS PADRDHCMQY IVAVALIFGR LTSADYEDGV AADPRIDALR DKIICIEDPC FTKDYYDPEK RSIANGLTLE FRDGSKLEEV VVEYPIGHRL RRSEGIPLLE EKFRINLGRR FPAQQCEAIM NACHDQGRLE AMPVHEFIDL FVI
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