| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_2603 |
|---|
| Symbol | |
|---|
| ID | 3775200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | + |
|---|
| Start bp | 2685051 |
|---|
| End bp | 2686676 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637801057 |
|---|
| Product | cytochrome-c oxidase |
|---|
| Protein accession | YP_401620 |
|---|
| Protein GI | 81301412 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
|---|
| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 48 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.240231 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACCA CCGCTTTTCT ACCGGATCAG TCACCGGAAA AAATTCATAG TAGTACTGGC
TGGCGCGAAT ACTTTAGCTT TAGTACCGAT CACAAGGTGA TTGGCATCCA GTATTTAGTT
TTAACGTTCA TCTTTTATTT AATTGGTGGG GCGTTAGCGA CAGCAGTTCG TCTTGAACTT
GCCACACCGA CTGTGGATGT CGTCAGCCGT GATTTGTACA ACCAACTCTT CACGGTTCAC
GCTACCGTCA TGATTTTCCT CTGGATCGTG CCAGCGGGTA GTGGTGCTTT TGGGAACTAT
CTCATTCCCC TGCTAATTGG TGCACGGGAC ATGGCATTCC CCAAGTTGAA TGCTGTCGCC
TTTTGGCTTC TGCCGCCAGC AGGAATTCTC TTAATTGCGA GCTTCTTAGT TGAAGCCCCA
AGCTCAGGCT GGACGTCCTA TCCACCCCTC AGCCTGATGA GTGGTAAGAC CGGAGAGATG
ATTTGGATCC TCAGTGTTCT GCTGCTCGGA ACATCCTCGA TCCTGGGCGC TATCAACTTT
GCCACCACAA TCATTAAGAT GCGCCGCCCT GGCTTGGGAT GGAATCAAAT GCCATTGTTT
TGCTGGGCAA TGCTATCTAC CTCAATCATG GCAATCCTAT CGACGCCAGT CTTGGCTGGT
GCCCTGATTC TGCTCAGCTT TGACTTAATG GTAGGCACGA ACTTCTTCAA TCCATTAGGT
GGTGGTAATC CTGTCGTTTA TCAGCACTTG TTCTGGTTCT ATTCTCATCC AGCGGTCTAC
ATTATGATCC TGCCGGTTTT TGGCATGATC TCTGAGATTC TGCCAGTTCA TGCTCGCAAG
CCTATCTTTG GCTATCAAGC GATCGCTTAT TCCAGCCTAG CGATTACCTT CCTGAGCCTA
ATTGTTTGGG CGCACCACAT GTTTACTAGT GGTACCCCAC CGTGGCTGCG AATGTTCTTT
ATGATTGCCA CCATGATCAT TGCCGTTCCA ACAGGCATTA AAGTTTTTAG CTGGTTGGCA
ACGCTTTGGG GCGGGAAACT TCAACTGACG AGTGCCCTAC TCTTCAGTGT CGGCTTTATT
TCGATGTTTG TGATTGGAGG GCTGAGCGGC ATTATGCTCG CCTCAGTTCC TGTTGATATT
CATGTTCACG ATACCTACTT CGTCGTTGCG CACTTCCACT ATGTTCTCTT CGGGGGCAGT
GTTTTTGGCC TCTATGCTGG CATCTATCAT TGGTTCCCCA AAATGACTGG GCGTCTGTTG
AATGAGGGCT GGGGAAAAGT TCATTTCATC TTGACGCTTG TGGGCTTTAA CCTCTGCTTC
TTACCGATGC ACTGGCTAGG CTTGCAGGGC ATGCCGCGCC GCGTGGCTGA ATACGATCCA
CAGTTTGCCA CGGTCAACTT AATCTGCTCA ATTGGTTCAT TTATCCTGGC TATTTCCACA
ATTCCCTTCC TAATCAATGC AGTTTGGAGC TGGATTGCAG GCGCTAAAGC TGGTCCTAAC
CCTTGGGGAG GCATTACACC CGAATGGCTT ACCAGTTCTC CTCCGCCTGT TGAGAATTGG
GTTGGAGAAG CTCCGCTCGT GACCAATCCC TATGGCTATG GCGATCGCAA AATTATTCAG
CCTTAA
|
|---|
| Protein sequence | MTTTAFLPDQ SPEKIHSSTG WREYFSFSTD HKVIGIQYLV LTFIFYLIGG ALATAVRLEL
ATPTVDVVSR DLYNQLFTVH ATVMIFLWIV PAGSGAFGNY LIPLLIGARD MAFPKLNAVA
FWLLPPAGIL LIASFLVEAP SSGWTSYPPL SLMSGKTGEM IWILSVLLLG TSSILGAINF
ATTIIKMRRP GLGWNQMPLF CWAMLSTSIM AILSTPVLAG ALILLSFDLM VGTNFFNPLG
GGNPVVYQHL FWFYSHPAVY IMILPVFGMI SEILPVHARK PIFGYQAIAY SSLAITFLSL
IVWAHHMFTS GTPPWLRMFF MIATMIIAVP TGIKVFSWLA TLWGGKLQLT SALLFSVGFI
SMFVIGGLSG IMLASVPVDI HVHDTYFVVA HFHYVLFGGS VFGLYAGIYH WFPKMTGRLL
NEGWGKVHFI LTLVGFNLCF LPMHWLGLQG MPRRVAEYDP QFATVNLICS IGSFILAIST
IPFLINAVWS WIAGAKAGPN PWGGITPEWL TSSPPPVENW VGEAPLVTNP YGYGDRKIIQ
P
|
|---|
| |