| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_2535 |
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| Symbol | |
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| ID | 3775128 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | + |
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| Start bp | 2615811 |
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| End bp | 2619110 |
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| Gene Length | 3300 bp |
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| Protein Length | 1099 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637800985 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_401552 |
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| Protein GI | 81301344 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.12937 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGGCATTG TAAAAAAGCC GAGCAATCAA GGTGGAGCTC AAGATACTAG AAGAGGAGGT
GCTAGCCCCT TTGTTTTGGG CTTTGAGCAG TTCATGCGAT TACGGGTTTG GCTGTCACTC
CCTCGACTCT GTGGCTTCTT GGCAATCACC CTCGGGCTCA TCGTGCTCTT GGGCTGGGCA
ATCAGTAGTC CAGCACTAAC GATGCTGCTG CCGGGCAGTG CCAACACAAT GAAGGTCAAC
ACGGCTTTCT GCTTTATCCT CAGCGGTTGG GCATTGATCT GGGCGCAGTC AAGGGTGCGT
TGGCAGCAGC AATGGCACCG CGTTTGTCTA TTACTAGTCG CTACGATCAC CAGCTTGACC
ATGCTGCAAT ATGTCACGGG CTGGAATCTA GGGCTGGATG AACTGCTGGT TCGCGATCGC
ATTTCCCCAG TGGGGTCTGG CCTGCCGGGT CGGATGAGTG ATCAAGCTGC AATCTCGTTT
TTACTGCTGA CCGCTTCTCT CAGCTGTGCT CGCAGTCAGA GAGAACCACG AGTGATCTGT
AGCCAGAGTC TTGCTTTGAT TGCCGGGTGG ATTGCAATGC TTGGCCTTTT TGGCTATTTA
CTCGGCATCA ATGCTTTTTA TCTATTCCTC GACCGCCAAA GTGCGATCGC CTCTAACACG
GTTGTAGGGT TCTTAGTGCT CAGCATTGGG GCTCTCAGCT TCCACCCCCA ACGGGGATTG
CTAGCAATTC TGAGTAGTCC TTCGCTTGGG GGGCGACTGA GTCGGACTCT GTTGCCTTGG
CTCTTTGTAT TACCGCTGCT GTTACGCGGT CTCAAGTTTT TGAGCCAACA GTACTTATCG
GTCACCCCCG TGGTCAGTGA CGGCCTCGTG GCACTGATTA CGACCAGTCT GCTAGTCGCA
CTTCTTTGGG TTGTTGCGCG ATCGCTCAAT CAGCAAGAAG AAAAACTGTT GACCGCACTC
CAAGCAGCCC AAGAGATCCA GCGGCGTTTC CGACAAATTG TCATGCAAGC CCCTCAGCCG
ATGGTGCTCT ATCGCAGTGA CGGTTGCATC TTAGAGGTCA ACGAAGCTTG GCGGGAATTA
AGTGGTTATG AACTTGAAGA CACGCCCACC GTTGAAAGTT GGTTCGAAAA AGTCTATGGC
CCAGAGAAGG TAGCAGAAGT GTTACGCATC GCAGAGGAAG TTTATGCGAT GCCGCCCGGT
CAACGGCAGG CGAATGGGGA ATTTGTCATT CAAACTCGCT CGGGAGCGCT GCGGACTTGG
GATTTTTATT CCTCCGCTCT CGGGCCAGAC GCCGAAGGAC GATCACTAGT TTTAAGTACA
GTGATTGATG TCACCGAGCG TGCACACACT GATCGCCAGC TACGGGATCT CAGCGAAAAT
CTTGAGCATT TAGTGCAGAT CCGTACCACC GAACTGGAGT CGATTCGCGA TCAGCTCGAA
ACGGCTCAGC GCGTCGCCAA GGTTGGCAGT TGGGCCTTTG AGGTTGTCAC CCAAACAATT
GAATGGTCGC CTCAACTGTT TCGTTTGTTT GGGATGAACC CCAGTGAGCC CGTACCCAGC
TTTGAGGAAC ATCTACAGCA AATTCATCCC CTCGATCGCG ACTACTGGCT TAGAAATGTG
CAGAGATGCA TCCAACAAGG AACTCCTTAT TCCATCGACT TTCGTGTGAC TTGGGCTGAT
GGCAGCATTC ACTGGGTCAG TGGACAAGGC GAAGCCGTTC GTAATGCTGA AGGTCAGGTG
GTGCGACTCA TCGGCAGTGC GATCGATATC ACCGATCGCA AAGCTACAGA ATTACGTTTA
GCCCAGGCCG AAGAGCAAGC CCGTCTTCTG ATCGAGAAGA ATCCGGGGGT GGTCTATCGT
TTCTCGCCGA ATGCTCTACA GGACAAGGGG TATGTCAGCC CTCAGATTGA AACCTTGCTC
GGAGTTGATC AATCCCAGTG GCATGCAGGC TTTGCCAACA CGTGGCAACA GTTTGTGCAT
CCAGACGACC TAGACAAGAT ACAACAGCAG TTTGAAGCCG CGCTCGCCGA ACAACGAGCC
TACAGCTTTG AATATCGGAT GATTCGCAGC GATGGCCAAA CCATTTGGGT GCGCGACCAA
GGCGAGATGT TGCTGTCAGT CGATGGAACG CTGCTAGTCC AAGGACTAGC GATTGATATC
ACAGCACTCA AAGAAACGGG CTTGGCGTTG CAGGAGCGCA TTCAAGAACT CGATCAACGT
AATCGGGAGA TGCAACTGCT GGGACAGCTG AATGATTTTC TACAGGCTTG TTCCACGGTT
GCTGAAGCAG GACAAGTAAT TGCCGGATTT CTCCCCCAAC TCTTTCCTAA CTGTCGCGGT
CAGCTGAGTT TGCTCCAGCG GGATGGAAAG CTCGAAATGC TCCAAGCCAT TGTTGAATGG
GGCCAACCCG TTCATACTCA GCCGTCTTTT TTGCTCAGCG ATTGTTGGGC TCTACGCCGT
GGTACGCCCT ATCTCTATGA TCCGGACCAA GTGCTTAGTC CAGCTTGCCC CCACGTCAAG
GGCAAGATCT CCTCGGGAGA AAGCATTTTT TGCTTGCCGC TCGCCGCTTT CGGCGAGATT
TTGGGGCACC TACAGTTTGA ACAAATGGTT ACACATGACA ATAGCTGTGT GGACAGCAAG
GCCCCACCTC TAGCTGAAAC CATCGCTGAG CAACTTGCAT TAGCAATTGC CAACCTCCAA
CTGCGAGAAA CCCTGCGCCA AGAGAACCTG CGCGATCCGC TTACAGGGTT GTTCAATCGC
CGCTATCTGC AGGAATTTTT TGAACAGGAA TTGGCCCGCG CCAAGCGCAG TGGTGACAGC
ATCGGGATAT TAATGCTGGA TATTGACTAC TTCAAGCGTT TCAACGACGA GTTTGGCCAC
GATGCAGGCG ATATGGTCTT GAAACAGGTA GCTCGCGCCC TGCTTAACCA AGTTCGTGCC
TCAGATGTGG TCTGTCGCTT TGGTGGCGAA GAAATTGCGA TTTTAATGCC GGGAGCCAGC
CTTGAAGTCA GCGCTCGCAA GGCTGATCAA ATTCGACAGG CGATCGCTCA ATTAATCATC
AGCTATCACG AGCAAACGCT GCCCTCTCTC ACGATCTCAA TTGGGGTGGC TGCATTCCCA
GAATCGGGGC TAGCGAGCGA TACGTTGATC AAGTCAGCTG ACACCAGTCT TTACCAAGCC
AAAGCTGCAG GCCGTAACTG CGTCGTGGTA CATCAACCCA GCTGGCGCAA ATTCGAATTG
ATGAGCGCTG ATGACTCTGC AATCGCGGTT AATCCAGATC CGTCAGGCTC GCCGAGCTGA
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| Protein sequence | MGIVKKPSNQ GGAQDTRRGG ASPFVLGFEQ FMRLRVWLSL PRLCGFLAIT LGLIVLLGWA
ISSPALTMLL PGSANTMKVN TAFCFILSGW ALIWAQSRVR WQQQWHRVCL LLVATITSLT
MLQYVTGWNL GLDELLVRDR ISPVGSGLPG RMSDQAAISF LLLTASLSCA RSQREPRVIC
SQSLALIAGW IAMLGLFGYL LGINAFYLFL DRQSAIASNT VVGFLVLSIG ALSFHPQRGL
LAILSSPSLG GRLSRTLLPW LFVLPLLLRG LKFLSQQYLS VTPVVSDGLV ALITTSLLVA
LLWVVARSLN QQEEKLLTAL QAAQEIQRRF RQIVMQAPQP MVLYRSDGCI LEVNEAWREL
SGYELEDTPT VESWFEKVYG PEKVAEVLRI AEEVYAMPPG QRQANGEFVI QTRSGALRTW
DFYSSALGPD AEGRSLVLST VIDVTERAHT DRQLRDLSEN LEHLVQIRTT ELESIRDQLE
TAQRVAKVGS WAFEVVTQTI EWSPQLFRLF GMNPSEPVPS FEEHLQQIHP LDRDYWLRNV
QRCIQQGTPY SIDFRVTWAD GSIHWVSGQG EAVRNAEGQV VRLIGSAIDI TDRKATELRL
AQAEEQARLL IEKNPGVVYR FSPNALQDKG YVSPQIETLL GVDQSQWHAG FANTWQQFVH
PDDLDKIQQQ FEAALAEQRA YSFEYRMIRS DGQTIWVRDQ GEMLLSVDGT LLVQGLAIDI
TALKETGLAL QERIQELDQR NREMQLLGQL NDFLQACSTV AEAGQVIAGF LPQLFPNCRG
QLSLLQRDGK LEMLQAIVEW GQPVHTQPSF LLSDCWALRR GTPYLYDPDQ VLSPACPHVK
GKISSGESIF CLPLAAFGEI LGHLQFEQMV THDNSCVDSK APPLAETIAE QLALAIANLQ
LRETLRQENL RDPLTGLFNR RYLQEFFEQE LARAKRSGDS IGILMLDIDY FKRFNDEFGH
DAGDMVLKQV ARALLNQVRA SDVVCRFGGE EIAILMPGAS LEVSARKADQ IRQAIAQLII
SYHEQTLPSL TISIGVAAFP ESGLASDTLI KSADTSLYQA KAAGRNCVVV HQPSWRKFEL
MSADDSAIAV NPDPSGSPS
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