Gene Synpcc7942_2405 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_2405 
Symbol 
ID3774689 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp2478739 
End bp2478993 
Gene Length255 bp 
Protein Length84 aa 
Translation table11 
GC content60% 
IMG OID637800853 
Producthypothetical protein 
Protein accessionYP_401422 
Protein GI81301214 
COG category[R] General function prediction only 
COG ID[COG1661] Predicted DNA-binding protein with PD1-like DNA-binding motif 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.000012248 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.00954272 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGAGATTG CCGTTTTGCG TTTGCGACCG GGTCAGGATC TCAAACAAGC CCTGTGGGAT 
TGGACACAGG AACACCAACC CAGTGCGGCT TGCTTGCTTA GTGCGGTCGG CAGTCTGGAT
GCGGTTTGCC TGCGACTGGC CGGCGGCGAT CGCCAACTCC AGCGACAAGA GCCTCACGAA
ATTCTGAGTC TGAGCGGCAC CCTCTGTCTG GATGGACTGC ACCTTCATCT CGCGATCGCG
GATGCCACGG GCTAG
 
Protein sequence
MEIAVLRLRP GQDLKQALWD WTQEHQPSAA CLLSAVGSLD AVCLRLAGGD RQLQRQEPHE 
ILSLSGTLCL DGLHLHLAIA DATG