| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_2199 |
|---|
| Symbol | |
|---|
| ID | 3773756 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | - |
|---|
| Start bp | 2277916 |
|---|
| End bp | 2280528 |
|---|
| Gene Length | 2613 bp |
|---|
| Protein Length | 870 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637800644 |
|---|
| Product | DNA polymerase III subunit alpha |
|---|
| Protein accession | YP_401216 |
|---|
| Protein GI | 81301008 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc)
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01445] intein N-terminal splicing region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.16253 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTTG TTGGCCTGCA CATGCACAGT GACTACAGCC TGCTGGATGG GGCGAGTCAG
CTACCGGATC TGGTGGCGCG AGCTAAAGAA CTGGGAATGC CCGCGATTGC TCTGACAGAT
CACGGCGTGA TGTATGGAGC GATCGAACTC CTCAAAGTTT GCAAAAATCA GGGCAATATT
CGACCGATTA TCGGCAATGA AATGTATGTC ATCAATAGCC CGATTGATGA CCCTAACCCT
CGCGTCCGCA AATATCACCA GATTGTTTTA GCCAAGAATA AGAAAGGCTA TCAAAATCTG
GTTAAGTTGA CCTCTATTTC GCATCTGCAA GGCTTTAAAG GACGGGGAAT TTTTGCACGT
CCTTGTATTG ATAAAGAACA TCTCGAAAAA TACCGTGAAG GTCTAATCGT TACGAGTGCC
TGTTTGGGGG GTGAAATTCC CCAAGCAATT TTGCAAAGTC GTCCGGATGT GGCTCGACGG
GTAGCAGCTT GGTATCAAGA GCGCTTTGGC GAAGACTTCT ATCTGGAAAT TCAAGATCAC
GGCTCACCTG AAGATCGGAT TGTCAATGTC GAAATTGTCC GAATTGCTCA GGAACTGGGG
ATTGAACTGG TTGCCACTAA CGATAGCCAC TTTATTTCCT GTTTTGATGT TGAAGCCCAT
GATGCTCTGC TCTGTATTCA AACGGGCAAG CTTGTCGTCG AAGATAAACG GCTTCGCTAT
AGCGGCACAG AGTACCTCAA GTCTGCTGAG GAAATGCATC AGCTATTTCG CGATCACTTG
CCAGATGATG TGATTGCTAA AGCGATCGCT AATACGCTTG TGATTGCCAG CAAGATCGAG
GACTATAACA TCCTTGGCGA GCCTAAAATT CCGACTTTCC CTGTCCCCGA TGGCTACAAC
GAAGAAACCT ATATGGCGGA AGTTGCTCGT CAGGGACTGG CGGAGCGGCT CAATTGCGAT
CGCTATGAAG ACTGCGAAGA AGCTTATCGC GATCGCTTGG AATACGAAAT TAAAATGATG
CACGAAATGG GATTTGCCTC CTATTTCTTA GTGGTTTGGG ATTACATCAA ATTTGCCCGT
GACAACAATA TTCCTGTGGG CCCAGGTCGT GGATCAGCGG CGGGCTCACT GGTTGCCTAC
TGTATGGGCA TCACCAATAT TGATCCAGTT CATCATGGCT TGCTATTCGA AAGATTCCTG
AATCCAGAAC GCAAATCAAT GCCGGATATT GATACAGACT TCTGCATTGA TCAGCGGGAT
AAAGTGATTG ACTATGTGAC TAAAAAGTAT GGAGAAGATC GCGTTGCCCA GATCATTACC
TTCAACCGAA TGACATCCAA AGCGGTGCTG AAGGATGTGG CGCGCGTGCT GGATATCCCC
TACGGGGAAG CCGACCGCAT GGCCAAGCTC ATCCCTGTAG CGCGGGGTAA GCCGGCAAAA
CTGAAGGTGA TGATTTCAGA TCAAACACCT GCGCCAGAGT TTAAAGAAAA ATATGAAAAA
GATGCCCGAG TGAAACACTG GGTCGATATG GCGCTGCGCA TTGAGGGAAC CAACAAAACA
TTTGGCGTCC ATGCAGCGGG CGTCGTGATT TCAGCCGTTC CGCTCGATGA AATTGTGCCG
CTCCAGCGGA ATAATGATGG CCAAGTGATC ACGCAGTATT ACATGGAGGA TATTGAAGCC
TGTGGCCTCT TGAAAATGGA TTTTCTGGGC CTCAGAAACC TGACAATGAT CCAAAAAGCG
ATCGATCTTG TTCAGGAAAC GAGTGGACAA GCCATTGATC CCGATCGCCT ACCAATGGAT
GATCCAAAAA CCTACCAGCT GTTAGCTAAA GGTGATCTGG AAGGGGTATT TCAGTTGGAG
TCTTCCGGGA TGCGGCAAAT TGTCCGCGAT TTGAAACCAT CTAACCTCGA AGATATTTCT
TCAATTCTGG CACTCTATCG GCCGGGGCCT TTGGATGCTG GTTTGATTCC TAAATTTATT
AATCGGAAGC ATGGCCGAGA AGCGATCGAC TATGCCGATC AGATGCTTCA GCCCATCCTG
AATGAAACCT ACGGAATCAT GGTTTATCAG GAACAAATTA TGAAAATTGC TCAAGACATG
GGTGGCTACA CACTCGGAGA AGCTGACTTG CTTCGGCGGG CGATGGGCAA GAAGAAAATG
TCGGAGATGG TCAAACACCA AAGCACCTTT GTCGAAGGTG CAAAGAAGAA TGGTGTTGCA
GAAAAGGTTG CAGCTGAGCT CTTTGATCAG ATGGTGCTGT TTGCCGAATA TTGTTTGGCG
GCAGATACAG AAGTTCTGAC CGTTGAATAT GGCCCGATCG CGATTGGCAA ACTAGTCGAA
GAAAATATTC GTTGCCAAGT TTATTGCTGT AACCCAGATG GCTATATCTA CAGTCAGCCG
ATTGGTCAAT GGCATCAACG AGGTGAACAG GAAGTGATTG AATACGAACT CAGTGATGGT
CGCATCATTC GAGCAACTGC TGACCATCGC TTTATGACTG AAGAGGGTGA AATGCTGTCG
CTGGATGAAA TCTTTGAGCG ATCGCTAGAA CTGAAGCAGA TTCCGACACC ATTGTTAGCG
ATCGCTCAGC CATCCCCGTT AGCGACGGCG TAA
|
|---|
| Protein sequence | MSFVGLHMHS DYSLLDGASQ LPDLVARAKE LGMPAIALTD HGVMYGAIEL LKVCKNQGNI
RPIIGNEMYV INSPIDDPNP RVRKYHQIVL AKNKKGYQNL VKLTSISHLQ GFKGRGIFAR
PCIDKEHLEK YREGLIVTSA CLGGEIPQAI LQSRPDVARR VAAWYQERFG EDFYLEIQDH
GSPEDRIVNV EIVRIAQELG IELVATNDSH FISCFDVEAH DALLCIQTGK LVVEDKRLRY
SGTEYLKSAE EMHQLFRDHL PDDVIAKAIA NTLVIASKIE DYNILGEPKI PTFPVPDGYN
EETYMAEVAR QGLAERLNCD RYEDCEEAYR DRLEYEIKMM HEMGFASYFL VVWDYIKFAR
DNNIPVGPGR GSAAGSLVAY CMGITNIDPV HHGLLFERFL NPERKSMPDI DTDFCIDQRD
KVIDYVTKKY GEDRVAQIIT FNRMTSKAVL KDVARVLDIP YGEADRMAKL IPVARGKPAK
LKVMISDQTP APEFKEKYEK DARVKHWVDM ALRIEGTNKT FGVHAAGVVI SAVPLDEIVP
LQRNNDGQVI TQYYMEDIEA CGLLKMDFLG LRNLTMIQKA IDLVQETSGQ AIDPDRLPMD
DPKTYQLLAK GDLEGVFQLE SSGMRQIVRD LKPSNLEDIS SILALYRPGP LDAGLIPKFI
NRKHGREAID YADQMLQPIL NETYGIMVYQ EQIMKIAQDM GGYTLGEADL LRRAMGKKKM
SEMVKHQSTF VEGAKKNGVA EKVAAELFDQ MVLFAEYCLA ADTEVLTVEY GPIAIGKLVE
ENIRCQVYCC NPDGYIYSQP IGQWHQRGEQ EVIEYELSDG RIIRATADHR FMTEEGEMLS
LDEIFERSLE LKQIPTPLLA IAQPSPLATA
|
|---|
| |