| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_2111 |
|---|
| Symbol | |
|---|
| ID | 3774330 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | + |
|---|
| Start bp | 2192025 |
|---|
| End bp | 2192933 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637800556 |
|---|
| Product | xylose repressor |
|---|
| Protein accession | YP_401128 |
|---|
| Protein GI | 81300920 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1940] Transcriptional regulator/sugar kinase |
|---|
| TIGRFAM ID | [TIGR00744] ROK family protein (putative glucokinase) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.044241 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.767119 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATACC CCGCGACCGT GATCGGCGTC GATTTGGGCG GAACTGCCAT GAAATTGGGG
CGTTACACGA TTGAGGGACA GTGTCAGCAG GAATTGACCG TCCCAACTCC AACCCCCAGC
ACGCCAAGCA ATGTTCGGGC TGCGCTCGTA GAGGCGATCC GTCAGCTCGA TCCCCAAGCT
GAAGCACTGG CGATCGGCAT TGGTACACCG GGGCCTGCGG ATGCAGCCGG TCGGGTAGCG
CGGGTTGCCA TCAATCTGGA CGGCTGGACT GAGGTCCCCC TGGCTGACTG GCTGGAAGCC
GATCTGCAAC GGCCGGTCAT TTTGGCCAAT GATGCCAACT GCGCTGGCTT GGGTGAAGTC
TGGCTGGGTG GCGGTCGGGG CTATCGCGAT GCCATTTTGC TGACTCTCGG GACCGGCGTG
GGCGGGGCGA TCGTACTCAA TGGCGAGCTG TTTGTGGGTC GCACGGGAAC AGCAGCAGAA
CTCGGGCTGA TCACACTGGA CCCGGCTGGG CCGCATTGCA ATAGTGGCAA CCAAGGATCG
TTAGAGCAAT ATGCCTCGAT CGGAGCCGTT CAGCGGCGCT TTGGTTGCGA TCCCAAAGAC
CTCGGCGATC GCGCTTCCCA AGGGGATCCT GAAGCGATCG CGGCTTGGCA GGACTATGGC
CGAACGCTCG CTGCCGGTCT TGCCAGTCTG GTCTATGTCC TGACGCCCGA AGTGATTATT
CTGGGCGGCG GCATCAGCGG CAGTGCAGCT TTCTTCTTAC CGGCACTGAC GGAGGAGCTG
CATCGTCGCG TCCTCCCGAC CTCTCGTGAA GATCTGCAGA TTGCGATCGC GGCACTCGGC
AACGAAGCCG GTCGAGTTGG GGCTGCCAAG TTGGCTTGGG ACAAGCTACA AGCACTGGGC
AAGGTCTGA
|
|---|
| Protein sequence | MAYPATVIGV DLGGTAMKLG RYTIEGQCQQ ELTVPTPTPS TPSNVRAALV EAIRQLDPQA
EALAIGIGTP GPADAAGRVA RVAINLDGWT EVPLADWLEA DLQRPVILAN DANCAGLGEV
WLGGGRGYRD AILLTLGTGV GGAIVLNGEL FVGRTGTAAE LGLITLDPAG PHCNSGNQGS
LEQYASIGAV QRRFGCDPKD LGDRASQGDP EAIAAWQDYG RTLAAGLASL VYVLTPEVII
LGGGISGSAA FFLPALTEEL HRRVLPTSRE DLQIAIAALG NEAGRVGAAK LAWDKLQALG
KV
|
|---|
| |