| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_2092 |
|---|
| Symbol | |
|---|
| ID | 3774311 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | + |
|---|
| Start bp | 2173280 |
|---|
| End bp | 2174821 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637800537 |
|---|
| Product | proton-translocating NADH-quinone oxidoreductase, chain M |
|---|
| Protein accession | YP_401109 |
|---|
| Protein GI | 81300901 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1008] NADH:ubiquinone oxidoreductase subunit 4 (chain M) |
|---|
| TIGRFAM ID | [TIGR01972] proton-translocating NADH-quinone oxidoreductase, chain M |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.690734 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGTTGG TGCTTTTAAT TACAGCGATC CTTGGAGCTT CCCTACTGTC CTTGGGCAGT
CAGGACAGCG CTCAAATCCG TCGCTGGGCA ATTGCAGCAG CCAGTGCCAT TTTGGTGCTG
TCGGGCAGTT TGTTGATGGG CTTTGACCCG GCAGTCGCCG AACCGCAACA GGCGATCGAC
TGGGAATGGC TGCCCTCCCT CGGAATTCAT TTCAGCCTAG GCCTCGATGG TCTTTCGCTG
CCGCTATTGC TGCTCTCTAG CTTGCTCACC CTGCTGGCAA TCGCGTCGAG TCCCACCGAT
CAAACGCGTC CGCGCCTCTA CTACAGCCTG ATTTTTCTGG CGGCTGCGGG CATGGCGATC
GCGCTGCTGT CTCGTGACTT GCTGCTGTTT GTACTCGGCT ATGAGCTGGA ACTGATTCCG
ATGTACCTCC TGATCTCAAT CTGGGGGGGA GAACAACGGG GTCCTGCCGC AACGCGCTTC
CTGATTTTCA CGGCCATTTC TGGCATCTTG CTGCTATTGG GGGCAATCGC GACCGCCGTC
CTGAGCAGCC AACCCTTTAG CTTTGCCTTT GATCAGCTCC AGACGATTGA GCTGCCCTTG
GCCCTGCAGC TACCCCTGCT GCTGCTGTTT GTCGCTGCCT TCGCGATCAA GCTGCCGTTG
GTACCCTTCC ACAGCTGGCA ACCTGCGGCC TACGGTCAAG CATCCCCGGC GATCGCCATG
CTCTTGGGTG GCGCGATCGC CAAACTGGGC GGCTATGGTC TGTTCCGGTT TGGCTGCAGC
TTCTTCCCCG AAGCCTGGTC TCTGATTGCA CCGAGCCTGG CTGTGCTCGC TGCCGTGACC
GCTCTCTACG GCAGCCTCAA CGCCCTGCGT CAGACTGACC TGCAACGCTT GGTAGCCTTT
AGCTCCATCG GCCACATGGG GACTCTGCTG CTGGCGCTCG CGGCTGGTAC TCCCTTGGCT
CTGCAAGGGG CGATCGCGCA AATGGTTGCT CACGGCTTAA TTTTGGCGCT GTTGTTCCAG
CTTGTCGGCA CGATCGAGCG GGTCACGGGT CGCCGCGATC GCGATCAACT CTCAGGTCTA
CTCAATCCGA TTCGCGGTCT ACCGCTTACG GCGGGTCTGT TGCTCTTGGC TGCCATGGCC
AGCGCTGGAA TCCCCGGACT CGTCGGCTTT GTGGCAGAGT TCCTGATCTT TCAAGGCAGC
TTCGCCATCT TCCCTTGGGC GACCGTCGGT TGTATCGCTG CATCGGGGCT GACTGCGGTC
TACTTTGTCA GCCTGATCAA CCGCGCTTGC TTTGGCAAAC TCGATAACCA AGAAGCTCGC
TGGCGTCCAG TGACGGTGAG CGAACGCTGG CCGGCAGTTG TCCTTGCACT CACTGTGATG
GCGTTAGGGC TGGCTCCGCA AGGCTTGGTG CGCTGGAGCG AAAGCAGCAG TCTGGCGATC
GCTGCTCACC TGCCCCAACC GCTTCAATCC ACGATCGCGG AAGGGCGATC GCGATCGACC
CCCGTCTTCC CAACCCCTTC GTTGTCCGCC GTCCTGCAGT AA
|
|---|
| Protein sequence | MMLVLLITAI LGASLLSLGS QDSAQIRRWA IAAASAILVL SGSLLMGFDP AVAEPQQAID
WEWLPSLGIH FSLGLDGLSL PLLLLSSLLT LLAIASSPTD QTRPRLYYSL IFLAAAGMAI
ALLSRDLLLF VLGYELELIP MYLLISIWGG EQRGPAATRF LIFTAISGIL LLLGAIATAV
LSSQPFSFAF DQLQTIELPL ALQLPLLLLF VAAFAIKLPL VPFHSWQPAA YGQASPAIAM
LLGGAIAKLG GYGLFRFGCS FFPEAWSLIA PSLAVLAAVT ALYGSLNALR QTDLQRLVAF
SSIGHMGTLL LALAAGTPLA LQGAIAQMVA HGLILALLFQ LVGTIERVTG RRDRDQLSGL
LNPIRGLPLT AGLLLLAAMA SAGIPGLVGF VAEFLIFQGS FAIFPWATVG CIAASGLTAV
YFVSLINRAC FGKLDNQEAR WRPVTVSERW PAVVLALTVM ALGLAPQGLV RWSESSSLAI
AAHLPQPLQS TIAEGRSRST PVFPTPSLSA VLQ
|
|---|
| |