Gene Synpcc7942_2012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_2012 
Symbol 
ID3774199 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp2081506 
End bp2082729 
Gene Length1224 bp 
Protein Length407 aa 
Translation table11 
GC content59% 
IMG OID637800457 
Productstage II sporulation protein D-like 
Protein accessionYP_401029 
Protein GI81300821 
COG category[D] Cell cycle control, cell division, chromosome partitioning 
COG ID[COG2385] Sporulation protein and related proteins 
TIGRFAM ID[TIGR02669] SpoIID/LytB domain 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.703242 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCATGG CAACCCTCCG GTCGGCGTTG TTCGCCAGCC TTGCAGCGAT CGCTGTTCTT 
CCGACTTTCA GTCCGCCAGC CAGCGCTCAA GCGGCTCCCA CCATCCGCGT GGGTATTGCG
ATCGCCCGCC CCCAGATTCG GGTTGGCAGC TCGACTCCCG CGATCATCCG CAATGAGCAA
GGCCAGCAGA TTGGGCAACT TCCCACTCAG CAAGGTAGCT ACGCCCAGCC CTCCGCCAAT
GGACAGGTGC AGCTCGGTTC ATTCCGGGCT CGGCAAATTT GGCTAGAACC GACGAATGAC
GGTCTCGTTT GGATTGGCGA TCGCTGGTAT CGAGGGCGCC TGCAACTGAT TCTGGATCAA
GGGGCAGTCA CGGCCATCAA TCATGTCGGG CTGGAGTCCT ATCTTTACAG CGTTGTCGGC
AGCGAGGTCT ATGCCAGTTG GCCAACAGAG GCTCTGAAAG CCCAAGCTGT GGCCGCTCGC
TCTTTTGTGC TCTACCGTCG CGATCGCAAC CGCGATCCTC GCTTTGATGT TGGCAATTCC
ACGACTTGGC AGGTCTACAA AGGGATCGCC AGTGAAGCCC CAACCACGAT CGCAGCGGTC
AATGCCACAG CCGGCCAAGT CCTGACCTAC AACAACCGTG TCATTGAAGC CGTCTTCCAC
GCCTCCAGTG GCGGACATAC TGAAAACGTC GAAGATGTCT GGAGCAAGCC CCTGCCCTAC
CTACGAGGGG TCCAAGACTA CGACCAAAAC GCACCAGTCT TTAACTGGAG TCAAAGTTTT
TCGGTGCAAG AGCTCTCAGC CAAGCTAACC GGCGTCGGCC GGATTCTCCA GATTGAGCCC
CTCCAAACAA CGCCCTTCGG CCGCATTCGA GATTTGCGCA TCACGGGCGA TCGCGGCAGC
CGGGTGGTTA AAGGAGATGA AGTACGTCGT GCCTTAAATC TCCGCAGCAG TCTATTCACC
GTCAGCAGTG AAGCCAGCAG CAATTGGTTC GACTTCCTCC GACCCAATCC AGCCCCCCAA
CCCCCCAGCC AGTTCACGAT TATTGGCCGC GGCTATGGCC ATGGTTTGGG TCTCAGCCAG
TGGGGGGCCT ATGGCCTCGC CAGCCAAGGC GTAGACTACC GCCGCATTCT TTCGCATTTC
TACCAGAACA CCAATCTCAG TCCCCTAGGT GGGGTGATCG CCCAGAACTC AAGCGGCGGC
GACCTCATCA GTGCTCAAGA CTAG
 
Protein sequence
MPMATLRSAL FASLAAIAVL PTFSPPASAQ AAPTIRVGIA IARPQIRVGS STPAIIRNEQ 
GQQIGQLPTQ QGSYAQPSAN GQVQLGSFRA RQIWLEPTND GLVWIGDRWY RGRLQLILDQ
GAVTAINHVG LESYLYSVVG SEVYASWPTE ALKAQAVAAR SFVLYRRDRN RDPRFDVGNS
TTWQVYKGIA SEAPTTIAAV NATAGQVLTY NNRVIEAVFH ASSGGHTENV EDVWSKPLPY
LRGVQDYDQN APVFNWSQSF SVQELSAKLT GVGRILQIEP LQTTPFGRIR DLRITGDRGS
RVVKGDEVRR ALNLRSSLFT VSSEASSNWF DFLRPNPAPQ PPSQFTIIGR GYGHGLGLSQ
WGAYGLASQG VDYRRILSHF YQNTNLSPLG GVIAQNSSGG DLISAQD