Gene Synpcc7942_2010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_2010 
SymbolpsbV 
ID3774197 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp2079493 
End bp2080140 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content54% 
IMG OID637800455 
Productcytochrome c-550 
Protein accessionYP_401027 
Protein GI81300819 
COG category 
COG ID 
TIGRFAM ID[TIGR03045] cytochrome c-550 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTAAATA TTGAGGATGG TTTTGGTTGC CTTTGGCTGC TGCAAATCAT TTTGCCCTGT 
AGCCAAACCG CCTCAACCTC TTCATCACAT TGGGCTGGCG AGAGCCGTCC TTTTCGAGAG
CTAGTCAGGA GCAGTTCACC ATCCATGGTT TTCAAGACGC TGAGAAGAAC CCTCTGGCTG
ACTTTGGCGG CCCTGCTTGC CGTGTTTCAG TTCAATCTTG GTGCCGCTCA GGCCGCTGAA
CTGACAGCAG AAACTCGCAC AGTCAAGCTG AATCCCCAAG GCGACAATGT CACGTTGAGC
CTGAAGCAGG TGGCTGAAGG CAAACAACTG TTTGCCTATG CCTGCGGTCA ATGCCATGTG
GGTGGCATTA CCAAGACTGA CCCGAACGTG GGTCTTGATC CTGAGGCTTT GGCGCTGGCC
ACCCCGCCTC GCGATAGCGT CGAAAGCTTG GTGGACTATC TGCATAACCC CACCACCTAC
GATGGTGAGC GCGAGATTTC GGAATTGCAC CCCAGCACCA AGAGCACCGA TATCTTCCCG
AAAATGCGTA ACCTGACGGA AGACGATCTG GTGGCAATCT CGGGTCACAT TCTGCTGCAA
CCCAAGATCG TCGGTACTAA GTGGGGCGGC GGCAAGATTT ACTACTAA
 
Protein sequence
MVNIEDGFGC LWLLQIILPC SQTASTSSSH WAGESRPFRE LVRSSSPSMV FKTLRRTLWL 
TLAALLAVFQ FNLGAAQAAE LTAETRTVKL NPQGDNVTLS LKQVAEGKQL FAYACGQCHV
GGITKTDPNV GLDPEALALA TPPRDSVESL VDYLHNPTTY DGEREISELH PSTKSTDIFP
KMRNLTEDDL VAISGHILLQ PKIVGTKWGG GKIYY