Gene Synpcc7942_1999 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1999 
Symbol 
ID3774186 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp2067448 
End bp2067735 
Gene Length288 bp 
Protein Length95 aa 
Translation table11 
GC content56% 
IMG OID637800444 
ProductRNA-binding region RNP-1 
Protein accessionYP_401016 
Protein GI81300808 
COG category[R] General function prediction only 
COG ID[COG0724] RNA-binding proteins (RRM domain) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGATTT ACGTTGGTAA TCTTTCCTTC CGCGCGACCG AGGAAGATGT TCGGGAAGTG 
TTCGCAGAGT ATGGCCCCGT TAGTCGGGTT AGCCTGCCTG TCGATCGTGA AACAGGTCGC
CTCCGTGGCT TCGCTTTCAT TGAAATGGAA GAAGATGCTC ACGAAGATGC TGCTATCAGC
GAGCTCGATG GCGCTGAGTG GTTTGGTCGC CAGCTGCGCG TCAGCAAAGC GCGTCCCAAA
GATGATCGTC GTCCTGCCGC ACGTAGCGGT GGCTACGCCG ACAACTAA
 
Protein sequence
MTIYVGNLSF RATEEDVREV FAEYGPVSRV SLPVDRETGR LRGFAFIEME EDAHEDAAIS 
ELDGAEWFGR QLRVSKARPK DDRRPAARSG GYADN