Gene Synpcc7942_1978 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1978 
Symbol 
ID3774165 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp2049645 
End bp2049980 
Gene Length336 bp 
Protein Length111 aa 
Translation table11 
GC content54% 
IMG OID637800423 
Productthioredoxin 
Protein accessionYP_400995 
Protein GI81300787 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG3118] Thioredoxin domain-containing protein 
TIGRFAM ID[TIGR01068] thioredoxin 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.274716 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.21653 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTCCAG TCGTCACAGC GCAAACCTTC AGCGCTGAAG TACTCCAAGC AAAAGATCCT 
GTTCTGGTTT ACTTCTGGGC TGCTTGGTGC GGGCCCTGTC GACTCTTAAC TCCCTGCCTC
GAACAATGGC ATCAGACGGC TAGCCAAAAT CTACGGGTGG TCAGCATTAA TGCCGATGAA
AATTTCACCT TGGCCAATCG CTATCGACTA GCGACGTTGC CGACCCTGAT CTGGTTTGCA
GACGGTCGCA TTCGCGATCG CCTAGAAGGG ATCAGCGATC GCGAAGCCCT GCAGACCTTC
CTCAAGCGCT ACCAACCTGT GGCAAATGCC GTCTAA
 
Protein sequence
MLPVVTAQTF SAEVLQAKDP VLVYFWAAWC GPCRLLTPCL EQWHQTASQN LRVVSINADE 
NFTLANRYRL ATLPTLIWFA DGRIRDRLEG ISDREALQTF LKRYQPVANA V