| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1977 |
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| Symbol | |
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| ID | 3774164 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | - |
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| Start bp | 2047567 |
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| End bp | 2049564 |
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| Gene Length | 1998 bp |
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| Protein Length | 665 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637800422 |
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| Product | NAD(P)H-quinone oxidoreductase subunit F |
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| Protein accession | YP_400994 |
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| Protein GI | 81300786 |
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| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1009] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit |
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| TIGRFAM ID | [TIGR01974] proton-translocating NADH-quinone oxidoreductase, chain L |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.343145 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATTTC TCTACGATTA CGCCTGGCTG ATCCCAGTCC TTCCGCTACT AGCCGCCACT
GGGGTTGGGC TGGGACTGAT CACCGTTAAC CAGGCCACCA ACAAATTGCG TCAGCTCAAT
GCGGCGCTGA TTATGACTGC TCTCGGAGGG TCTGCCACCT TTGCCTTCGG GCTACTGGCA
AGCCAACTCT CAGGGCACCC AACTTACACC CGCATGTTTG ATTGGGCCTC GGCGGGTGAT
TTTCACCTCA GCATGGGCTA CACGATCGAT CCGCTGACCA CAGTCATGCT GACGGTCGTC
ACCACGGTGG CTCTGCTGGT GATGCTCTAC ACCGATGGCT ACATGGCCCA CGATCGCGGC
TATGTGCGTT TCTACGCCTA CCTCAGTCTG TTCAGCTCCT CAATGCTGGG CCTGGTGATC
AGCCCCAACT TGGTGCAGAT CTACATCTTC TGGGAGCTGG TGGGCATGTG CTCCTACCTG
CTGGTGGGCT TCTGGTACGA CCGTAAAGCA GCGGCGGATG CCTGCCAAAA AGCCTTTGTC
ACCAACCGCG TTGGTGACTT TGGTCTGCTC CTAGGGATGC TGGGGCTCTA CTGGGCCACT
GGCAGCTTTG AATTCACAGA AATTGGCGAT CGCCTCCAGA GCCTGATCAG CAGTGGGGCG
CTGAGCGCCG GTCTGGCGAC GCTCTTCGGC ATCTTGGTCT TCCTAGGGCC GGTCGCGAAG
TCAGCGCAAT TCCCCCTCCA TGTCTGGCTG CCGGACGCGA TGGAAGGCCC GACCCCGATC
TCGGCACTGA TCCACGCGGC CACGATGGTT GCGGCTGGGG TCTTTTTGAT TGCCCGCATG
TATCCGGTGT TCGAGCAATT GCCGACGGTG ATGGATGTCA TCGCTTGGAC TGGTGCCTTC
ACTGCCTTCT TGGGAGCCTC GATCGCTCTC ACCCAAAACG ACATCAAAAA GGGTCTGGCC
TACTCGACCA TTTCCCAGTT GGGCTACATG GTGATGGCGA TGGGCGTTGG TGCCTATAGC
GCTGGCCTGT TCCACTTGGT CACCCACGCC TACTTCAAAG CGATGCTCTT CTTGGGCTCC
GGCTCGGTGA TTCACGGCAT GGAAGCCGTG GTTGGCCACA ATCCGGTGCT GGCGCAGGAT
ATGCGTCTGA TGGGCGGCTT GCGGAAATAC ATGCCAGTCA CCGCCATCAC CTTCCTCATC
GGGAACCTTG CGATCGCGGG GATTCCTCCT TTTGCCGGCT TCTGGTCGAA GGATGAAATT
CTGGGCGCGA CTTTTGCCGC CAATCCGATT CTCTGGGGTG TGGGCTTTGC CACCGCTGGC
CTGACGGCCT TCTACATGTT CCGCATCTAC TTCCTGACCT TTGAGGGATC GTTCCGGGGT
GAAGATGCGA CGATTCAAGC AAAACTGCTG GCGGAAGCGG GTGTGACTGC AGGCCATGGG
CACGACGAAC ATCACGACCA TGTGCCCCAC GAATCGCCCT GGACGATGGC TTTGCCGCTG
GCGATTCTAG CGGTGCCTTC CGCTCTGATC GGTCTACTGG GCATGCCTTG GAACAACCGT
TTTGAGGCCT TTGTGAAAGC TCCCGGTGAA GCAGTTCACG CTGGTCATTT CGAGCTACAG
GAATTCCTGA CCCTGGGCGG GGCTTCGGTG GCGATCGCTC TGACTGGGAT CACGATCGCG
TTGCTGACCT ATCGTCTAGG TCGGATCAAT CCGGCTGCGA TCGCAGAACG CTTCCAGCCG
CTCTATCAGT TTTCGCGCAA CAAGTGGTAC CTCGATGATC TCAACGACGT CCTGTTCGTT
CAGGGCAGTC GTCGCTTGGC ACGGCAGGTG CTGGAAGTCG ATTCCAAAGT GGTGGACGGC
TTGGTCAATC TGACAGGTCT GGTCACCTTG GTCACCGGCG AAAGCCTCAA GTACTTCGAA
AACGGTCGGG CTCAGTTCTA TGCCCTGATT GTCTTTGGCG CAGTGCTTGG TCTGGTGGTG
GCCTTCGGGG TGACCTAG
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| Protein sequence | MEFLYDYAWL IPVLPLLAAT GVGLGLITVN QATNKLRQLN AALIMTALGG SATFAFGLLA
SQLSGHPTYT RMFDWASAGD FHLSMGYTID PLTTVMLTVV TTVALLVMLY TDGYMAHDRG
YVRFYAYLSL FSSSMLGLVI SPNLVQIYIF WELVGMCSYL LVGFWYDRKA AADACQKAFV
TNRVGDFGLL LGMLGLYWAT GSFEFTEIGD RLQSLISSGA LSAGLATLFG ILVFLGPVAK
SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGVFLIARM YPVFEQLPTV MDVIAWTGAF
TAFLGASIAL TQNDIKKGLA YSTISQLGYM VMAMGVGAYS AGLFHLVTHA YFKAMLFLGS
GSVIHGMEAV VGHNPVLAQD MRLMGGLRKY MPVTAITFLI GNLAIAGIPP FAGFWSKDEI
LGATFAANPI LWGVGFATAG LTAFYMFRIY FLTFEGSFRG EDATIQAKLL AEAGVTAGHG
HDEHHDHVPH ESPWTMALPL AILAVPSALI GLLGMPWNNR FEAFVKAPGE AVHAGHFELQ
EFLTLGGASV AIALTGITIA LLTYRLGRIN PAAIAERFQP LYQFSRNKWY LDDLNDVLFV
QGSRRLARQV LEVDSKVVDG LVNLTGLVTL VTGESLKYFE NGRAQFYALI VFGAVLGLVV
AFGVT
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