Gene Synpcc7942_1906 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1906 
Symbol 
ID3775269 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1982513 
End bp1983253 
Gene Length741 bp 
Protein Length246 aa 
Translation table11 
GC content51% 
IMG OID637800347 
Producthypothetical protein 
Protein accessionYP_400923 
Protein GI81300715 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0760] Parvulin-like peptidyl-prolyl isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.32779 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.659216 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTTGA CGTCTTCTCA AAAACCTTTT CGGCTACTGG TGGGCGATCG TGAGGTTCAG 
GAAAGTGACT TAGCAGCACT GCTCCAAAAG CATCAACTCC TTCCAGAACT CGTCAAACGC
ATGCGCTTTG CGCAAGTTAT TGAGGGGATT GAAGTCCAGC CCGATGTCCT TGAGCAGGAA
TGTCAGGCCT GGTGTAAGCA GAATGGCATT GCTCCACAAC AGTTACCCCA ACTGCTAGCG
CAGCAGCAAA TCTCGCTTGA GCAATGGATG TCATCGGTTG AAAATCGATT GCGCCTGCGC
CTCTTTCAAG AACGTGAATT TAGCCACCGC GCTGAAAATC GCTTTCTCAA GCGGAAGAGC
CAGTTGGATC TGGTGACCTA CTCCTTACTC CGGCATTCGG ATGGCCATCT CATTCAGGAG
CTCTACCAGC AACTCTTGCA TGGAGAAGCT ACGTTTGAGG ATTTGGCAAC TCAATTTTCG
CAAGGCCATG AGGCTAAGAC GGCAGGTAAG TTGGGCCCTG TACCCTTGAG TCAGCCCCAT
CCAGCTCTTG CTGAAGTCTT GCGTACCGCC CAACCAGGGC AGATTCTCCC ACCCCGGAAT
CTGGAATCTT ACTGGTTGAT TATCCGCCTC GATCAGCTGC AGCCAGTGGC ATTTAATGAG
ACAATTCGCC GGCAGATGCT GCAGGAATTG TTTGATGAAT GGTTAGGTGC GGAAGTTCAG
CAAACACTAA ATACTCTGTA A
 
Protein sequence
MTLTSSQKPF RLLVGDREVQ ESDLAALLQK HQLLPELVKR MRFAQVIEGI EVQPDVLEQE 
CQAWCKQNGI APQQLPQLLA QQQISLEQWM SSVENRLRLR LFQEREFSHR AENRFLKRKS
QLDLVTYSLL RHSDGHLIQE LYQQLLHGEA TFEDLATQFS QGHEAKTAGK LGPVPLSQPH
PALAEVLRTA QPGQILPPRN LESYWLIIRL DQLQPVAFNE TIRRQMLQEL FDEWLGAEVQ
QTLNTL