| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1905 |
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| Symbol | |
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| ID | 3775268 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | - |
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| Start bp | 1979496 |
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| End bp | 1982498 |
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| Gene Length | 3003 bp |
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| Protein Length | 1000 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637800346 |
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| Product | cyclic nucleotide-binding domain-containing protein |
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| Protein accession | YP_400922 |
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| Protein GI | 81300714 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR01846] type I secretion system ABC transporter, HlyB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0871226 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.242471 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTGCTA TTCCTTCGAA CCTCTGTGAA CTTCTAGCAG GGCAAGCCTA TTTTCAGGCC
TATCCTGCCG CGGCCTATGA ACCGTGGCGA GCACAACTCC AGCTGGGTAA GTTTGCAGTT
GGTCAACCTT TACTCCCCCC AGAGCAGCTG CCCAGTCATG TCTTAGTTGT CTTGAGTGGC
CAGATTCGGG TTGTCTATCA GCCGGTGGGT CAGGTTCGAG GAATTAGCTT AGGCCGCTTC
GGCGCTGGGG CTTGTCTTGG CTGGGCACCT CTGTTGCGGG GATGCCCCGG AGAAGCGAGT
AGTGGATCTG AGGCAGGAGC TGTTCTCGCG ATTCCAGCTG CTGCCTTCTT AGACATGCTG
AAGCAGTTGC CAGACTTGGC TCAGGCTTTT GGCAGCCAAG CCGCGCCTAG TGAGGTGATG
TCGGTTTTAC AGGCCCAGTC TTGGCCCAGT CCACTCACCG TTCAGGAGTG GTCGGCCTTT
GTCCAAGAGT TATTGCCCCA GACGCGGGTG CAGCTTGTGG ATACGGTACA TAGCGGTGCT
AACACGCTGT TGTCTAGGGA CTACGACTGG TATGTGAGTG GTAACAATGG CACCTCGGCG
CTTGGTCTGC CGATTGATCT GGAGGCTGCG ATTCCCTCGC CTAAGGGTAG TCTGGCCCTG
CGCTTGCTTG GGTTGCCTGC AGGAACTGTT GCGCAACGGC AGACGCGCAA CCACCATGAC
GCTGTAGGAA CTTCAGAAGA ACCTTCAACG GCTGCTACTA CAGATAGTGC CACTGTTACC
GATTCACCTT CGCCTTGGAC CTCTACCGTC CCTGCTGATC TGTCAGCGGA CCTCTACGAC
GGCAGTCAGC GCAGTCAAAA ATTCCCAGTC GAGCGCGGAA ATGATCCCGT GAGTGAGGCA
CAAGCCTGCC TCAAAATGAT CGCGCGATCG CTCAAAATTC CTTTTCGCCG CGACCAAGTT
CAACGCGTTA TTGAAGAACA ATATCGACGC CTCAAATCAA TTTCTCTGCA AGAGCTCGCA
GTGTTGCTGG AAATGCAGGC GCTGCGCAGT CAGATTTTGC AGCTACGTCT GGTTGATTTG
CCCCGAGTGC CTTTACCTGC GCTGATTGCT TGGGAAGAAG GCCATGCTGT GCTTTACGCG
GTTGATGCAA CTAGCATCAC TTTTGCCGAT CCTCGACAAG GCTTAATAAC GCTTTCTTTG
GCGGAATTTC AGCAGCGCTG GGGCAACGCT GGCACTATTT TGCTGGCCAC CAAAACCCAG
TTCACCCAAA GTCAACGTTT TGGCCTGAGC TGGTTTTGGC CTTCAATCCA ACGCTACCGA
GTGCGCTTGA TTGAGGTGCT GATTGCCTCA CTAGTCGTTC AGCTGTTTAC GCTAGCCAAT
CCCCTAATTA TCCAACAGGT GATTGACAAG GTTATCGGCC AAGGCAGTCT TAATAACCTC
AATAGCTTTG CTGTCTTACT GGTTATCTTA GGTGTTTTCC AAGGGCTGCT CAGCAGCCTA
AGAACCTATC TTTTTGCTGA TACAACTAAC CGTATTGACC TCAAGCTAGG CAGTGACATT
ATCGATCGAC TACTGAAGTT ACCTCTGCGC TATTTCGAGC GGCGACCTGT AGGGGAACTG
AGTAGCCGGG TTCAAGAGCT GGAAAAAATT CGTAGTTTTC TGACTGGCAC AGCTCTCACA
ACCGTGATGG ATGCGATGTT CTCGGTCATC TACATCCTAG TCATGCTGGT TTATAGCTGG
TTCTTGACAC TGGTTGCACT CTCGACAGTC CCCATCTTTG TAGCCATCAC ATTTTTTGCC
TCGCCGGTAG TTAGACGGCA ACTGCGGGAA AAAGCAGAAC GGAATGCTGA AACACAGTCC
CAACTTGTTG AGGTTTTGAG TGGTATCCAG ACTGTTAAAG CTCAAAATAT TGAACTCAAA
GCCCGTTGGC AGTGGCAAGA GCGCTATGCC CGTTATATTG CCGCAGGATT CCGTAACATC
AACACGTCAA CTGCGGCGTC TTCACTCACC AATTTCTTTA ACCAACTGTC AGGCTTACTC
GTTCTTTGGG TGGGTGTGTA TTTAGTATTC GACAACCAAT TGAGCCTTGG TCAACTGATT
GCATTCCGTA TTATTTCTGG TTACGTTACC CAACCGTTAT TACGACTCGC TCAGTTGTGG
CAAAACTTCC AAGAGACAGC TCTATCGCTT GAGCGTTTGG CCGATATCGT TGACACCCCC
CAAGAATCGG ATGATGACGA CCAGGGCAAG ATTCCAATGC CAATGATCAA CGGCAAAGTT
GAATTTCGGA ATCTAAGCTT CCGCTTTGGC GAACAAGGGC CATTGCAGCT TTCGAACGTG
ACGCTGGAGA TACCTGCTGG TGAGTACGTT GGTATTGTTG GGCAGAGCGG CTCTGGCAAG
AGTACCCTCA TGAAACTTTT GCCAAGACTT TACTCGCCGC TTGAAGGTGA GATTTTGATT
GATGGCTACG ATATCAGCAA GGTTGAACTA TATTCCCTTC GGCGCCAAAT CGGCATTGTT
CCTCAAGATA GTTTGCTTTT CCAAGGAACC GTCGAAGAAA ATATCTCTTT AACGAAGCCG
AATGCAACAA CTGACGAAAT CATTACTGCT GCTAAAGCGG CAGGTGCTCA TGATTTCATC
ATGACTTTGC CTTTAGGCTA TAACACTCGT GTTGGTGAGC GTGGTGGTGC CCTTTCGGGC
GGCCAACGAC AACGAATTGC GATCGCTAGA ACCGTCTTGC AAAATCCTCA GCTTTTGATC
CTTGACGAGG CAACGAGCGC CCTAGACTAT GATACGGAGC GTCAGGTCAG CATCAACCTC
CAACAACATT TCCGGGGCAA AACAGTATTC TTCATTACTC ACCGCCTAAG TACAGTCCGA
CATGCTGACC GAATTATCGT TATGGATAAG GGAGCTATGG TTGAACAGGG TAGCCATGAT
GAATTAATGG AACTTAGAGG TCGCTATTTC TGTCTATATC GTCAACAAGA TGCTTTGAAC
TAA
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| Protein sequence | MVAIPSNLCE LLAGQAYFQA YPAAAYEPWR AQLQLGKFAV GQPLLPPEQL PSHVLVVLSG
QIRVVYQPVG QVRGISLGRF GAGACLGWAP LLRGCPGEAS SGSEAGAVLA IPAAAFLDML
KQLPDLAQAF GSQAAPSEVM SVLQAQSWPS PLTVQEWSAF VQELLPQTRV QLVDTVHSGA
NTLLSRDYDW YVSGNNGTSA LGLPIDLEAA IPSPKGSLAL RLLGLPAGTV AQRQTRNHHD
AVGTSEEPST AATTDSATVT DSPSPWTSTV PADLSADLYD GSQRSQKFPV ERGNDPVSEA
QACLKMIARS LKIPFRRDQV QRVIEEQYRR LKSISLQELA VLLEMQALRS QILQLRLVDL
PRVPLPALIA WEEGHAVLYA VDATSITFAD PRQGLITLSL AEFQQRWGNA GTILLATKTQ
FTQSQRFGLS WFWPSIQRYR VRLIEVLIAS LVVQLFTLAN PLIIQQVIDK VIGQGSLNNL
NSFAVLLVIL GVFQGLLSSL RTYLFADTTN RIDLKLGSDI IDRLLKLPLR YFERRPVGEL
SSRVQELEKI RSFLTGTALT TVMDAMFSVI YILVMLVYSW FLTLVALSTV PIFVAITFFA
SPVVRRQLRE KAERNAETQS QLVEVLSGIQ TVKAQNIELK ARWQWQERYA RYIAAGFRNI
NTSTAASSLT NFFNQLSGLL VLWVGVYLVF DNQLSLGQLI AFRIISGYVT QPLLRLAQLW
QNFQETALSL ERLADIVDTP QESDDDDQGK IPMPMINGKV EFRNLSFRFG EQGPLQLSNV
TLEIPAGEYV GIVGQSGSGK STLMKLLPRL YSPLEGEILI DGYDISKVEL YSLRRQIGIV
PQDSLLFQGT VEENISLTKP NATTDEIITA AKAAGAHDFI MTLPLGYNTR VGERGGALSG
GQRQRIAIAR TVLQNPQLLI LDEATSALDY DTERQVSINL QQHFRGKTVF FITHRLSTVR
HADRIIVMDK GAMVEQGSHD ELMELRGRYF CLYRQQDALN
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