| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1904 |
|---|
| Symbol | |
|---|
| ID | 3775267 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | - |
|---|
| Start bp | 1978129 |
|---|
| End bp | 1979454 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637800345 |
|---|
| Product | hemolysin secretion protein-like |
|---|
| Protein accession | YP_400921 |
|---|
| Protein GI | 81300713 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.466134 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.309514 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTATTT CATCGCCTAC ACCCAGTCCA GAACCAGCTC AAACCCCAGC TACGGATGCT
TCTTTCAATC CTGATCAAGA TGTAAGTCTG AATCAGAGTC GCTTATGGTC GCGACTGACA
ATTTGGACGC TAGTTGGAGT GACAGCTAGT GCAACTGCTT GGGCTTGCAT CGCACAAATT
GATGAAGCCG TACAAGTTCA AGGACAATTA GAGCCGAAAG CAGCAGTCAA GGATGTTCAA
GCTCCTGTGG GGGGTGTTCT TGAACGGCTA GAAGTGAAGG AGGGGCAGCG AGTTACACAA
GGCCAAATAT TAGCGAGATT TAATGCGACT ACAGTTGCAG AGCGGATTCG GTCTCTAACA
GAGATCCGGG AACGCTTAGT TGCTGAAAAT CAGACCTTCC GAGCGCAAAT TGGCGAATCA
TCTGAAGGTT CAGTTTCCGT CAACCAACAA CAGCGAATTG AAGCAGCCCG CCGTGAATTT
GAAAGTCGGC AAGAAGCAGC TCGTTTAGAA GCATCTCAGC TTAAGCAACA GCAACTTCAA
GTTGAAAGTG AACTACAGCA AGTTCGATAC TCGCTAGACT TGAACCAGCG AATTCTCAAT
GACCTACGCC CCCTGTACGA GGAAGGGGGA ATTGCTAGGA CTCAGTACCT CAAGCAAGAA
GAGACAGTTA GTCAGCTAGA AAGCACACTA AGAAAAAATC AAGCAGAACT CCAACGCTTG
CAGTTTGCGG TCAGCCAAGC TGAAGCTCGC TTAACTAATA CGCAAACAGT CACATTTTCA
GAGGCTAGGG GACGTATTGA AGAAAATGCC CGTCGAATCG CTGAGATTGA TAGTCAAATT
ACAGAAGCTA AACAAACATT GAAATATCAG ATCGTTCGTG CTCCTCAAAG CGGAACAGTT
TTCGATATTA CAGCTCAAGG GCCGGGATAT GTAGCAAACA CCTCAGAACC ACTAATGAAG
CTGGTACCTG ATGATGAACT TGTTGCTCGA CTGTATATTC CCAACAAAGA TATAGGATTT
GTTCGGACTG GTCAGGATGT GGATATTCGT ATTGACTCCT ATCCGTTTAG TGAATATGGA
GATCTCAAGG GTAAGTTGAC GCGAGTTGGC TCAGATTCTC TTCCTCCCAA CGATACCTAT
CAATATGTTC GCTTCCCAGC AGAAGTGACG TTGCAAGAAC AAAAACTTGT TAGCCGGGGT
CGGGAGCTGC CAATCCAATC AGGGATGTCT GTTTCGGCCA GTATCCGTCT ACGTCAAAGA
CCTGTCATCA CTTTGCTTTC AGATCTCTTC TCGCGTAGTA GTGATGCACT CAAGACAATT
CGCTAG
|
|---|
| Protein sequence | MSISSPTPSP EPAQTPATDA SFNPDQDVSL NQSRLWSRLT IWTLVGVTAS ATAWACIAQI
DEAVQVQGQL EPKAAVKDVQ APVGGVLERL EVKEGQRVTQ GQILARFNAT TVAERIRSLT
EIRERLVAEN QTFRAQIGES SEGSVSVNQQ QRIEAARREF ESRQEAARLE ASQLKQQQLQ
VESELQQVRY SLDLNQRILN DLRPLYEEGG IARTQYLKQE ETVSQLESTL RKNQAELQRL
QFAVSQAEAR LTNTQTVTFS EARGRIEENA RRIAEIDSQI TEAKQTLKYQ IVRAPQSGTV
FDITAQGPGY VANTSEPLMK LVPDDELVAR LYIPNKDIGF VRTGQDVDIR IDSYPFSEYG
DLKGKLTRVG SDSLPPNDTY QYVRFPAEVT LQEQKLVSRG RELPIQSGMS VSASIRLRQR
PVITLLSDLF SRSSDALKTI R
|
|---|
| |