| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1870 |
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| Symbol | |
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| ID | 3775233 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | - |
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| Start bp | 1941531 |
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| End bp | 1942814 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637800311 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_400887 |
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| Protein GI | 81300679 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGTTT TTGCCCAAGC TCACGCCCGC CTCGGTCTGG CTTGTTTGTT GGTGTCAATC
ACAGCCTCGG GCTGTCAGAT CTTGCCGCCA AGCTCTGCTC AAACCAATCG GGAGCAGCAG
CGATCGCCCA TCACTGCGGT GGATGCTGCG GTAGTTGAAC GGCAACCCCT CCAAGAAGCC
ACCCGGTACA CCGGCACGAC GGAACCTTTC CAATCTGTGT CGCTGCGGGC TCAAGTTGAA
GGTCAAGTGC TGGGGCTTTC CGTCGATGTG GGGGATCCAG TTCAGTCGGG GCAGTTACTC
GCCCGCCTAG ACGATCGCCT GCAAAGCACC GCGGTAGTTG CGGCAGCGGC AGAAGTGGCG
GCTCGTCAGT CTGAAGTGGC TAGCCAAAGA GCTGAGGTGA TTGCTGCTAT GGCCTCCGTC
GAGCAAGCTC GCCTCCAGCT CCAACAGGCC CGATCCGATG CAGCCCGCCT AACGCGCCTG
TTTCAGGCGG GAGCAATTTC TGCGCAGGAA GCTGAAACAG CTCAGACTGC CGTATTGACG
GCCGAACAAG CGGTTCGCAC TGCCCAACAA CAGGTGCAAA CCCGTCAACA GGCTGTGGCG
GCGGCTGAAC GTCGGGTGGT TGCCCAACAG GCGATCGCCA ACCAAGAACA GGCGCGGCGC
AACTTCACGC AGCTGATTGC GCCGGTCACC GGTCTGGTTT TAGAGCGCAG TACGGAAGCA
GGTAACCTCG CTCGTGAGGG CGATGAGATT CTCACGATTG GCGACTTTAG CCGCATCAAA
GTTGTCCTGC GTGTCTCTGA GCTAGAACTT GCCAACCTGC GGGTTGGACA GTCCGTCCAA
GTCCGACTGG ATGCTTTTCC CAAGCAGACC TTTACGGGGC AAATCAGCCG GATTGCGCCG
GTAGCTGATC GCCGAACCCG GCTGATTCCT GTGGAAATTA CCATGCCTAA TCCTGATGGT
CGGATAGGCA GCGGTTTATT GGCGCGGGTG GTACTGTCCA GCAGTGCGCC TGACCCGATC
GTCGTCCCTG AAGCGGCGCT CTCGACCGGG GAGACGCCCA CTACAAGCGA TCGCGGCACT
GTGTTCGTCG TCAAAAAGCA AGGCGATCGC ACCACCACCG AAGCGCGATC GGTGCGGTTA
GGACCTCGGG CCGATGGCCG TGTGGTCATT CAAAGCGGCT TACAAGCGGG TGAAACGATC
GTGGTGCGCA GTGCCAGTCC TCTCAAAGCG GGCCAGCAGG TTCGCCTCAG CATTCTGTCC
ACAGCGGGAG ACCAGAACGG ATGA
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| Protein sequence | MTVFAQAHAR LGLACLLVSI TASGCQILPP SSAQTNREQQ RSPITAVDAA VVERQPLQEA
TRYTGTTEPF QSVSLRAQVE GQVLGLSVDV GDPVQSGQLL ARLDDRLQST AVVAAAAEVA
ARQSEVASQR AEVIAAMASV EQARLQLQQA RSDAARLTRL FQAGAISAQE AETAQTAVLT
AEQAVRTAQQ QVQTRQQAVA AAERRVVAQQ AIANQEQARR NFTQLIAPVT GLVLERSTEA
GNLAREGDEI LTIGDFSRIK VVLRVSELEL ANLRVGQSVQ VRLDAFPKQT FTGQISRIAP
VADRRTRLIP VEITMPNPDG RIGSGLLARV VLSSSAPDPI VVPEAALSTG ETPTTSDRGT
VFVVKKQGDR TTTEARSVRL GPRADGRVVI QSGLQAGETI VVRSASPLKA GQQVRLSILS
TAGDQNG
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