| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1861 |
|---|
| Symbol | |
|---|
| ID | 3775224 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | - |
|---|
| Start bp | 1931340 |
|---|
| End bp | 1932605 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637800302 |
|---|
| Product | periplasmic binding protein of ABC transporter for natural amino acids |
|---|
| Protein accession | YP_400878 |
|---|
| Protein GI | 81300670 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCAGC GATCGCGGTC GGCTTGTGTT GCACTGATGT CTACAGTGCT ACTGGTCAGT
TGTCAAACGC AAGTCCAGTG GCCGTGGCAG GATCCGGGGG GGCTCAAGTT GGGTAGCCTG
CTGCCGCTGA CGGGAGATTT GGCTCAGTAT GGCCGACCCA TGCAAGACAC TGCTGAATTG
CTGGTGCAGA CGGTCAATGC CTGCGGCGGG GTGCAGGGGC TGCCAGTCCG CCTGATTCCA
GCAGACGATG AAACCAAACC CGATCGCGGC GTTGCGGCCA TGACCAAACT GGCGGAAGTC
GATCGGGTAG CAGGGGTGGT CGGCGCAGCG GCCAGCAATG TTTCGGATGC AGCCTTGACC
CTAGCGGTCA ACAACCGTGT GGTGATGATC TCGCCTTCCA GCACCAGTCC TCGTTTTACG
GAACGGGCCC GCCGGGGGGA TTTCAAAGGC TATTGGTTCC GAACGGCTCC CTCCGATGCG
CTGCAAGGGC CAGCCTTGGC CAAACTGGCG CTGGATCAAG GCTGGCGATC GGTCTCGGTC
ATTGCCATCA ATAATGACTA CGGCAATGGG TTGCTGCGAT CGTTCATTCC CGCTTTTGAG
CAGGCCGGCG GAGTGGTGTT TAACCGCGAT CAGCCGGTGC TTTACACGCC TGATGCCAGT
AGCTTTGACA GCGAAGTGGA ACAGGTTTTT CGCGATCGCC CCGATGCTGT GGTGTTGATT
GGCTACCCAG ATTCCGGCGC CCTCATTCTG AAAAGTGCTT ACGAAAAAGG ACTGTTGGGC
CAGTCTACGC AAATGTTGCT GACCGATGGT CTGAAGACTG ATCAATTGGC GGAGCTGGTC
GGACGTAATC CTCAGGGTCG CTACATCGTG CAGGATCTCG TCGGCGTTGC CCCCAGTTCG
GGCGGCCCGG GCCGCGAGGC GTTCCTCAAG CGTTATCAAG AGCGTTTTCA GCGATCGCCG
CAGGTGTTTG ATGCCAATAC TTGGGATGCC GCAGCGCTCT TGGTTCTGGC GGCTGAGAAA
AGTAAGTCCT TGGAAGGGGA AAAGCTCAAG GACAGCGTGG CAGCGATCGC TAATGGTCCG
GGAGAGCCAG TCAGTGATAT CTGTCAGGCC TTGGCCCTAG TGCGCGCGGG CAAACCGATC
AACTATCAAG GGGCCAGTAG CGAGCTCAAG CTGGACAACA ATGGCGATGT TTCTGGGCGC
TATGACTTCT GGCAGTTTGA TGCTGATGGC AAGGTCAAAA TCCTCAAGAC CGAGAGTTTT
CAGTAG
|
|---|
| Protein sequence | MMQRSRSACV ALMSTVLLVS CQTQVQWPWQ DPGGLKLGSL LPLTGDLAQY GRPMQDTAEL
LVQTVNACGG VQGLPVRLIP ADDETKPDRG VAAMTKLAEV DRVAGVVGAA ASNVSDAALT
LAVNNRVVMI SPSSTSPRFT ERARRGDFKG YWFRTAPSDA LQGPALAKLA LDQGWRSVSV
IAINNDYGNG LLRSFIPAFE QAGGVVFNRD QPVLYTPDAS SFDSEVEQVF RDRPDAVVLI
GYPDSGALIL KSAYEKGLLG QSTQMLLTDG LKTDQLAELV GRNPQGRYIV QDLVGVAPSS
GGPGREAFLK RYQERFQRSP QVFDANTWDA AALLVLAAEK SKSLEGEKLK DSVAAIANGP
GEPVSDICQA LALVRAGKPI NYQGASSELK LDNNGDVSGR YDFWQFDADG KVKILKTESF
Q
|
|---|
| |