| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1859 |
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| Symbol | |
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| ID | 3775222 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | + |
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| Start bp | 1927733 |
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| End bp | 1930486 |
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| Gene Length | 2754 bp |
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| Protein Length | 917 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637800300 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_400876 |
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| Protein GI | 81300668 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGTCCC CGCTACAGCC TTTTCTAGAG CCCGCCAACG TTCAGCAACT CGCTGGCGAG
GCTTTGACAT GGCTGTTTAC GCCAGCAGGG CAACTTTTGC TAGCCAGTCC CTCGGCGCAA
CAGCTTAGTC TGCTTAGCGA TCCCAATACA CTGTCGATTC CCAGCTGGCT CCAGCAGGTC
ATTGAGAAAG TTCTTGCTAG CAATCACTTA GACCAAAACT TAGAGCCACA AGTTGAGCAG
CTGCGAGTGG CTTTGGCTAC TGAAGTCGTT CATATTCCCC TGACCTTAGA ATTACAGTGG
CTTGCGGATG TCGAGTCAGA GGCCAGCTTC CTGCTCGTCA CGGGTTCCTG CCAAGACTCT
CATCAAAATC TCTTTCTCGA TTGGCAACAA CTCCAATCTC TAGAAGTTCA GCGGCTCAGC
CATAAAGTTG GGCACTGGAG CTGGAATCGA AGTCAGGCAG ATGAGTTCCT TGCTCCGCCA
CATATTTATA CGCAGATAGG CCGCTCTCTT CATGAACCTT TTACACTCAC TAGTTTTCTG
CAGCATTGTC ATAGCTCGCT GGAAAGCCTT CAAGCCAATG CTATTTCTCT AGGCAATCAG
CGATCGCATT ATCTATGGGA TTTTCCAGTT AAAACGGCTC ATAGCGATCG CTGGTTTGAA
TGCCACTGTC TGCTGCATCA TGATGAGACA GGCGAGCTGC TTAGCTTAGT AGGGAATATC
CGAGATATTA CTGAAGAGCA TCATATTCTC AGCCTCGTTC AAGATAGCGA AACCCGTTTT
CAAGTCCTGA TTGAAAGCAA TCCCAACGGT ATTCTTGTCC TCGATGAGCA AGGTGCTGTC
CTCTTCGCCA ACCATGTCGC TGAGCAAGTC TTTGATCAAT CCCTCAGCGA ATTACAAGGT
AAGTATTTAG GGCTGCCGTT AACCCTTAAC GTCACGGTTC AGCTCGATCT GGTGCAACCG
GACGGCAGCC TACGCTATGT CGAAGTCTCG ATCGTACCAA TTCCTTGGCA GCAATCCAAA
GCTTATCTCG CACTTCTCAC CGATATTACC AGTCTCCAGC AGACTCAGCA GCGCCTGAAA
TTACTACAAG AAGCAACTGA AAATAGCCCT GCCAGTATTT TGATTACTAG TGCCGAAGGC
ATCATCGAAT ATGTTAATCC TGCCTTTGAA CTCATGACTG GCTATGGTGC TGATGAAGTG
ATTGGTAAAA ATCCTCGCTT TCTCAAGTCA GGCTTGATGT CTCCTAGTTT TTATCAAGAC
CTTTGGGAGA CGATCACGGC TGGCGAAACT TGGCGCGGTG AGCTTTACAA TCGGCGCAAA
ACAGGTGAGC TTTTTTGGGA TCGCACATCG ATTTCGCCTG TCAAGGACTT AGCAGGACAG
ATCATTCATT TTGTTGCTGT CAAAGAAGAT ATCACTGAGC AAAAACGGAA CCGCGAGTTG
CTTGATCATC AAGCTAATTA TGATAGCTTA ACCGATCTGC CTAACCGCAG TCTTGCCCTT
GATCGACTGC GACAAGCAAC TGCTTTGAGT GAGCGCAGCA ACGATACTGT CATTGTGATG
TTGCTCGATC TCGATCGCTT TAAAAATATC AATGATACTT TGGGGCATTC CTATGGCGAC
TGCCTGCTTC AAGAAATAGC GAAGCGGCTG CGTTATCATC TCCCGCGAGA AATTACTATT
TCACGCCTTG GGGGTGATGA GTTTCTGATT ATCTGCCCTG CCGTCAAGGA AAATATCCAC
CTAGAAAAAC TATCTCAACA GCTCCTCAAG ATTATTTCTC AGCCAATCAC TATTGAGGCT
GAGGAGCTCG TGATCACGGC AAGTATTGGT GTTGCCTGCT ATCCCAACGA TGGCGTCACG
CCAGAAGTTT TGATGCGCAA CGCTGATACC GCGATGTATA GCGCTAAGCG TAATGGCGGC
AATGACTTCC AGCTCTTTAT GCCGACGATG AATGCTGAAG CTCACGCCCG CATTCAACTT
GAAACTCATC TACGACATGC CCTAGAGCAG TACCAACTAA AGGTTTTCTA TCAACCGATC
ATCAGTTTGC AAGATAATCA TGTGGTTGGC CTTGAAGCTC TGGCACGCTG GCATGATCCT
GAGCTGGGTA ACATCCCCCC CGATCGCTTT ATCCCCATCG CTGAAGAGAC CGGTTTAATT
ATTCCTCTGG GCTATCGAGT TATCGAACAA GCCTGCCAAG ATGTTGCTAT TTGGCAACAG
AAATACAACT ATCCATTTTG GGTTGCGGTC AACCTTTCAC CTCGGCAATT GCGCAGCAAT
CGCTTCACCC AAATTACAGC TAAAATCCTA CAAAGACATA ACTTTCGACC GAACTATCTC
AAGCTCGAAG TTACCGAGCA AATGCTGCTC GATAATACCT CGACTATTGC GCAAATGCTG
GATACTCTTC ATCGCAAAGG AATTGCCCTC GCCCTTGATG ACTTTGGAAC GGGTTACTCT
GCCCTTAGCT ATCTGCGACG GTATCCATTT CAATCGCTGA AGGTCGATCA AAGCTTCCTC
AGAGATATTC CCCATTCCAC CGAAAGTTGT GCCCTTGTTA AAACGATTGT GGCGATGGCT
CACGGGTTGG GAATGCAAGC GGTTGCCGAA GGAGTTGAAA CCGCTGAGCA GGTTGAATTT
CTTAAGGCAA TTGGCTGCGA ATACGGACAG GGCTACTGGT TTAGCCGACC GTTACCAGCC
GTTGAAATCG ATAGTTTTCT CGCTGTATCA ACCGGGCATG AATCAATCAG CTAG
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| Protein sequence | MSSPLQPFLE PANVQQLAGE ALTWLFTPAG QLLLASPSAQ QLSLLSDPNT LSIPSWLQQV
IEKVLASNHL DQNLEPQVEQ LRVALATEVV HIPLTLELQW LADVESEASF LLVTGSCQDS
HQNLFLDWQQ LQSLEVQRLS HKVGHWSWNR SQADEFLAPP HIYTQIGRSL HEPFTLTSFL
QHCHSSLESL QANAISLGNQ RSHYLWDFPV KTAHSDRWFE CHCLLHHDET GELLSLVGNI
RDITEEHHIL SLVQDSETRF QVLIESNPNG ILVLDEQGAV LFANHVAEQV FDQSLSELQG
KYLGLPLTLN VTVQLDLVQP DGSLRYVEVS IVPIPWQQSK AYLALLTDIT SLQQTQQRLK
LLQEATENSP ASILITSAEG IIEYVNPAFE LMTGYGADEV IGKNPRFLKS GLMSPSFYQD
LWETITAGET WRGELYNRRK TGELFWDRTS ISPVKDLAGQ IIHFVAVKED ITEQKRNREL
LDHQANYDSL TDLPNRSLAL DRLRQATALS ERSNDTVIVM LLDLDRFKNI NDTLGHSYGD
CLLQEIAKRL RYHLPREITI SRLGGDEFLI ICPAVKENIH LEKLSQQLLK IISQPITIEA
EELVITASIG VACYPNDGVT PEVLMRNADT AMYSAKRNGG NDFQLFMPTM NAEAHARIQL
ETHLRHALEQ YQLKVFYQPI ISLQDNHVVG LEALARWHDP ELGNIPPDRF IPIAEETGLI
IPLGYRVIEQ ACQDVAIWQQ KYNYPFWVAV NLSPRQLRSN RFTQITAKIL QRHNFRPNYL
KLEVTEQMLL DNTSTIAQML DTLHRKGIAL ALDDFGTGYS ALSYLRRYPF QSLKVDQSFL
RDIPHSTESC ALVKTIVAMA HGLGMQAVAE GVETAEQVEF LKAIGCEYGQ GYWFSRPLPA
VEIDSFLAVS TGHESIS
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