| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1849 |
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| Symbol | |
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| ID | 3774424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | + |
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| Start bp | 1916620 |
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| End bp | 1917816 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637800290 |
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| Product | RNA polymerase sigma factor SigC |
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| Protein accession | YP_400866 |
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| Protein GI | 81300658 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.291457 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGCTG CCTATTTCAC TCATTCCACG GAATACGAAG CAGTTTCGTC TGACGTCGCT
AACTTGTCAG AAACTCCAAG TTCTGAAGCC GTGGAAACAG CGGTCTCTAG CCGCCAGTCA
ACCGATCTGA TTCGGCTGTA TTTACAAGAC ATCGGGCGAG TCCGTCTCCT TGGGCGCGAT
GAAGAGGTGA GTGAGGCACG GTGGGTGCAG CGCTACATGC AGTTGTTGGC GGTTCGGAAT
TGCGTCGCCG TTGAAGAAGG AGGGGTTCTC AAGGATTACG TTGACCTGCA GGAAGGCCGC
GATCGCCTGA CCGCGCAGCT GGGTCACCGT CCTTCCTTTG AAGCTTGGGC CAAGATTGTC
GATTGTTCCT TGACTGAATT ACGCCAAGCA CTACAACTGG GGCTGCATCG CTGGGCTGAA
GTCTGCCAGC TCGATCTTGA GGAATTAAAG CAGGTCTGCA AAGAAGGCCA GCGAGCTAAA
GATCACATGA TCAAGGCCAA CCTCCGTTTA GTTGTTTCCG TCGCTAAAAA ATATCAAAAC
CGAGGACTAG AGCTTCTCGA TCTCGTTCAA GAAGGCACCC TAGGACTAGA GCGGGCTGTT
GAGAAGTTCG ACCCGACGAA AGGCTATCGA TTTAGTACCT ATGCCTATTG GTGGATTCGT
CAGGGAATTA CCCGCGCGAT CGCAACCCAA AGTCGGACGA TTCGCTTGCC CGTCCATGTG
ACGGAGAAAT TAAACCGGAT CAAAAAAGCC CAGCGCAAAA TTGCGCAAAC AAAGGGCAGA
ACTGCCAACC TTGAGGAGAT TGCTCAAGAA CTTGAGATGA CCCCCGATCA AGTGCGGGAA
GTCCTGTTGC GGGTGCCCAA ATCGATTTCC CTAGAAACCC GTGTTGGCAA GGAAAAGGAT
ACGGAGCTAG GGGATTTGCT GGAAACCACC GATTTCACCC CAGAAGAACG ATTGACTCAG
GAATCCCTCA GCAATGATCT GCAGCGGTTA TTGCTCGAAC TCAATCACCG CGAACGCGAT
GTAATTCGGA TGCGGTTTGG TCTGCGCGAT GGGCAGATTT ATTCCCTCGC TGAAATTGGG
CAAGTGCTCG ACCTATCGCG TGAGCGAGTT CGCCAGATTG AGGCTAAGGC CCTGCAAAAG
CTGCGGCATC CGCGACGACG CAATCAGATC CGTGACTATT TGGAGTTGTT GCACTAG
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| Protein sequence | MTAAYFTHST EYEAVSSDVA NLSETPSSEA VETAVSSRQS TDLIRLYLQD IGRVRLLGRD
EEVSEARWVQ RYMQLLAVRN CVAVEEGGVL KDYVDLQEGR DRLTAQLGHR PSFEAWAKIV
DCSLTELRQA LQLGLHRWAE VCQLDLEELK QVCKEGQRAK DHMIKANLRL VVSVAKKYQN
RGLELLDLVQ EGTLGLERAV EKFDPTKGYR FSTYAYWWIR QGITRAIATQ SRTIRLPVHV
TEKLNRIKKA QRKIAQTKGR TANLEEIAQE LEMTPDQVRE VLLRVPKSIS LETRVGKEKD
TELGDLLETT DFTPEERLTQ ESLSNDLQRL LLELNHRERD VIRMRFGLRD GQIYSLAEIG
QVLDLSRERV RQIEAKALQK LRHPRRRNQI RDYLELLH
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