| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1746 |
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| Symbol | |
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| ID | 3775446 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | - |
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| Start bp | 1816600 |
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| End bp | 1817562 |
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| Gene Length | 963 bp |
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| Protein Length | 320 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637800185 |
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| Product | group2 RNA polymerase sigma factor SigB |
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| Protein accession | YP_400763 |
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| Protein GI | 81300555 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.204199 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTACCT CCTCCGCTCA ATACAGTCCT GATTTAGTCC GTGCTTACCT GCAAGAAATT
GGCCGGGTGC GGCTGCTGAC CGCTGAAGAA GAGTTGTGCT TTGGCCGACA GGTTCAGCGC
CTGATGATGC TCTTGGATGC TCAAACCGAG CTGCGCGATC GCTTGGGGCA TGAGCCTAGC
AAAGAAGAAT GGGCTGCTGC TGTTGACCTG AATCTCGAAG ATCTCGATCG CCAAATTGAG
CAAGGTCAGC GGGCGAAACG CAAAATGATT GAGGCCAACC TGCGCCTCGT TGTTTCGATC
GCCAAGAAAT ACCAGAAGCG TCACATGGAA TTCTTGGATC TCATCCAAGA AGGCACACTG
GGGCTGGAGC GTGGTGTCGA AAAATTCGAT CCCTCCAAAG GCTACAAGTT CTCTACCTAT
GCCTACTGGT GGATTCGCCA AGCTATTACC CGTGCGATCG CCCAACAATC CCGCACGATT
CGTCTGCCTA TTCACATCAC TGAAAAGCTG AACAAGCTCA AAAAAACCCA GCGCGAACTC
TCGCAGCAAT TGGGCCGCAG TGCCACAGCT TCAGAGCTGG CAGAAGTGCT GGAGCTGCCA
CTGGAGCAGG TGCGGGAATA CATCCAAATG AACCGCCAGC CAGTATCGCT CGATGTCAAA
GTAGGTGACA GCCAAGACAC TGAATTGCAG GAACTGCTGG AAGACGAGCA GTCTTCGCCC
TCAGATTACG TGGAACAAGA ATCGCTACGC CGCGATCTAC GCAATTTAAT GGCAGAACTG
ACCCCCCAGC AACAGGCCGT GATTGCCCTG CGCTACGGCT TGGATGAAGG TGACAGTCTG
TCGTTGGCCA AAGTCGGCGA ACGCCTGAAT ATCAGCCGCG AACGCGTGCG GAAACTAGAG
CGCCAAGCCA TGGATCACCT ACGTCGCCGC AGTCGTCTTC TGGCGGAATA CGCAGCTAGC
TAG
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| Protein sequence | MSTSSAQYSP DLVRAYLQEI GRVRLLTAEE ELCFGRQVQR LMMLLDAQTE LRDRLGHEPS
KEEWAAAVDL NLEDLDRQIE QGQRAKRKMI EANLRLVVSI AKKYQKRHME FLDLIQEGTL
GLERGVEKFD PSKGYKFSTY AYWWIRQAIT RAIAQQSRTI RLPIHITEKL NKLKKTQREL
SQQLGRSATA SELAEVLELP LEQVREYIQM NRQPVSLDVK VGDSQDTELQ ELLEDEQSSP
SDYVEQESLR RDLRNLMAEL TPQQQAVIAL RYGLDEGDSL SLAKVGERLN ISRERVRKLE
RQAMDHLRRR SRLLAEYAAS
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