| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1719 |
|---|
| Symbol | |
|---|
| ID | 3775419 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | - |
|---|
| Start bp | 1790369 |
|---|
| End bp | 1791796 |
|---|
| Gene Length | 1428 bp |
|---|
| Protein Length | 475 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637800158 |
|---|
| Product | isocitrate dehydrogenase |
|---|
| Protein accession | YP_400736 |
|---|
| Protein GI | 81300528 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0538] Isocitrate dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACGAGA AGATTCAACC CCCTAGCGAA GGCAGCAAAA TTCGCTTTGA AGCCGGCAAG
CCGATCGTTC CCGACAACCC GATCATTCCC TTCATTCGTG GTGACGGCAC TGGCGTTGAT
ATCTGGCCCG CAACTGAGCG CGTTCTCGAT GCCGCTGTCG CTAAAGCCTA TGGCGGTCAG
CGCAAAATCA CTTGGTTCAA AGTCTACGCG GGTGATGAAG CCTGCGACCT CTACGGCACC
TACCAATATC TGCCTGAAGA TACGCTGACA GCGATCCGCG AGTACGGCGT GGCAATCAAA
GGCCCGCTGA CGACGCCGAT CGGTGGTGGC ATTCGATCGC TGAACGTGGC GCTACGGCAA
ATCTTCGATC TCTATGCCTG CGTCCGCCCC TGTCGCTACT ACACCGGCAC ACCCTCGCCC
CACCGCACGC CCGAACAACT CGATGTGGTG GTCTACCGCG AAAACACCGA GGATATCTAC
CTCGGCATCG AATGGAAGCA AGGTGATCCC ACCGGCGATC GCCTGATCAA GCTGCTGAAC
GAGGACTTCA TTCCCAACAG CCCCAGCTTG GGTAAAAAGC AAATCCGTTT GGATTCCGGC
ATTGGTATTA AGCCGATCAG TAAAACGGGT AGCCAGCGTC TGATTCGTCG TGCGATCGAG
CATGCCCTAC GCCTCGAAGG CCGCAAGCGA CATGTCACCC TTGTCCACAA GGGCAACATC
ATGAAGTTCA CGGAAGGTGC TTTCCGGGAC TGGGGCTATG AACTGGCCAC GACTGAGTTC
CGAACCGACT GTGTGACTGA ACGGGAGAGC TGGATTCTTG CCAACCAAGA AAGCAAGCCG
GATCTCAGCT TGGAAGACAA TGCGCGGCTC ATCGAACCTG GCTACGACGC GATGACGCCC
GAAAAGCAGG CAGCAGTGGT GGCTGAAGTG AAAGCTGTGC TCGACAGCAT CGGCGCCACC
CACGGCAACG GTCAGTGGAA GTCTAAGGTG CTGGTTGACG ATCGCATTGC TGACAGCATC
TTCCAGCAGA TTCAAACCCG CCCGGGTGAA TACTCGGTGC TGGCGACGAT GAACCTCAAT
GGCGACTACA TCTCTGATGC AGCGGCGGCG GTGGTCGGTG GCCTGGGCAT GGCCCCCGGT
GCCAACATTG GCGACGAAGC GGCGATCTTT GAAGCGACCC ACGGCACAGC GCCCAAGCAC
GCTGGCCTCG ATCGCATTAA CCCCGGCTCG GTCATCCTCT CCGGCGTGAT GATGCTGGAG
TACCTAGGCT GGCAAGAGGC TGCTGACTTG ATCACCAAGG GCATCAGCCA AGCGATCGCT
AACCGTGAGG TCACCTACGA TCTGGCTCGG TTGATGGAAC CGGCGGTTGA TCAACCACTC
AAGTGCTCGG AATTTGCCGA AGCCATCGTC AAGCATTTCG ACGATTAG
|
|---|
| Protein sequence | MYEKIQPPSE GSKIRFEAGK PIVPDNPIIP FIRGDGTGVD IWPATERVLD AAVAKAYGGQ
RKITWFKVYA GDEACDLYGT YQYLPEDTLT AIREYGVAIK GPLTTPIGGG IRSLNVALRQ
IFDLYACVRP CRYYTGTPSP HRTPEQLDVV VYRENTEDIY LGIEWKQGDP TGDRLIKLLN
EDFIPNSPSL GKKQIRLDSG IGIKPISKTG SQRLIRRAIE HALRLEGRKR HVTLVHKGNI
MKFTEGAFRD WGYELATTEF RTDCVTERES WILANQESKP DLSLEDNARL IEPGYDAMTP
EKQAAVVAEV KAVLDSIGAT HGNGQWKSKV LVDDRIADSI FQQIQTRPGE YSVLATMNLN
GDYISDAAAA VVGGLGMAPG ANIGDEAAIF EATHGTAPKH AGLDRINPGS VILSGVMMLE
YLGWQEAADL ITKGISQAIA NREVTYDLAR LMEPAVDQPL KCSEFAEAIV KHFDD
|
|---|
| |