Gene Synpcc7942_1588 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1588 
Symbol 
ID3775012 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1653255 
End bp1655834 
Gene Length2580 bp 
Protein Length859 aa 
Translation table11 
GC content59% 
IMG OID637800021 
ProductCBS 
Protein accessionYP_400605 
Protein GI81300397 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0038] Chloride channel protein EriC 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.497223 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.185787 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTTCGTC TGCGTTTTCC GCCACGGTTT GCTAAAGCGC AGCAGTGGGC TGTGCTGGAA 
GCTTGCGCAA TCGGGCTGGT TTCAGGGGCG AGTGCCTTCC TGCTCAAACT GGGTGCAACG
GGTGTTCAAG ATCTGCGCGA TCGCCCGGGA CTGCCACTTG GCCTGCAGCT CCTTTTGCCA
CCGATTCTGG GCGCGATCGC CGGTTGGCTG GTGCAACGGT TTGCCCCCGA AGCCGAGGGC
AGCGGCATCA GCCAAGTGCA AGCCGCACTG TCAGGCAGCC GCATCGCCTT GAACCTACGG
GTTGCGATCG TCAAAATTGC CAGCACGATG CTGGTGGTTG GTTCAGGGCT GCCCCTAGGG
CGGCAAGGCC CAACCGTGCA AGTGGGCGCT TCCCTCGCGG GTCAGATGAG CCAGTGGTTC
CCCACCTCGC CAGACTACCG ACGACAGTTG ATTGCTTCCG GGGCTGCCGC TGGCCTCGCG
GCTGGCTTTA ATGCACCGCT AGCCGGTGTG ATGCTAGTGC TGGAGCAACT GCTCCATGAT
GTCTCTAGCT TCACCCTTGG GACAGCAGTC CTCGCAGCCT TTATTGGGGC AGTTGTTTCG
GGAATTCTCG GCAGTCAAAG CCTGAGTTTC AGCTCTGAAA TTGTTGCTGC TCCAGCCGCC
CTGACCGTGC CTGAGCTGCC CGTTGTCCTA CTTTTAGGAC TGTTTGCAGG GGGCCTAGGC
ATTTTGTTCA ATCGCGGCTT GGCGTTCAGT CAACGCTGTT ATGAACGCTT ACCGCTCAAG
GGGCTGCCTT GGCGGGTTGC GATCGCCAGT GGGATCTCGG CCTTACTACT GCTGTTGCTC
CCTGCTGCGC TGCGGCAAGG CCTGAGTAAC CCCTTTAGGG TGACCATCCC GGACAGTGGC
TCGATCGCGT TGCTGATGTT GGCGATCAAC TTTGGTCTGA CGCTGGTGGC TGCTGGATCA
GGGGCTTCTG GCGGGATTTT TGCGCCAGCG CTGGTGCTCG GTTCCAGTTT GGGTCTGGGC
GTGGTGCTTT CCATTCAGGC GATCTTTTTG CAGGTTGGGA TTCCGCTGCG GATCGATGCT
CCGGCAACCT ATGCCTTGGC GGGTATGGGC GCGATGTTTA GCGCCGTCAC CCAAGGGCCG
ATCACGGCGA TCGTGATTGT GTTCGAGATG ACCCGCGATT TCAACGCAGT GTTACCGCTG
ATGGTGGCCT CGATTACCGC CTATGGAATT GCCAGCTTGG CGCGATCGCC CAGCAAAGCA
GCCGCAGTGG TTGACGCCTT GCCAACTCTC AACAGCAGCT TGGGTCTGAC TGCTGCCCAG
GTGATGGCTA GTCCTGTGGA AACTCTGGAA GCCAGCCTAC CCCTGACTGA AGTAATCCAG
CAATTCAACC GCACTCACCA CCGAGGTTTT CCTGTTACTC AAAAAGGTGC TCTAGTCGGC
ATTGTTACCA GCTCCGATCT GGATGAACAA ACCCTCAAAG GCAAAGGCGA GTCCGTGCGG
CTCAGCGAAA TCATGACGCC TCACCCGCTG ACAGTTGCCC CCCAAGACAC TCTGGCCCAC
GTTCTTTACG TGCTGAACCG CTTCCAAATC AGCCGGTTGC CCGTGGTCGA TGGCCGCAAG
CTGGTCGGAA TCATCACACG AGCCGACATC ATTCGGGCCG AATCGGAACT CCTAAGCGGT
CAAGATATTG CTGCGACGCC GATCGCCCCC TCCTACGTCG CCTACGAAAC GCGATCGCCC
GCTACCGGCC AAGGACGTCT GCTAGTGCTA CTGGCCAATC CGCGCACAGC TCAATCTCTG
TTGCAGTTGG CGGCAGGGCT CGCCAGTTTG CGGAACTACG AGCTGGAATG TCTGCACCTG
ATTCCTGTCT CTCGCGAAGC CGATCCCTCT CAAACAGCAG TTTCAACTCT TGGAGCACGG
CGAATGTTGC GGCAGGCCGA GCGGTTGGGC CGACGCTGGC AGATTCCGGT TCATACGCAA
GTCCGGGTTT GTCACGATCT TTCTGCTGCG ATTCTAGAAA CGATTAGCGA TCGCCACATC
AACGATCTCG TGATGGGCTG GGGTGGCGGG GCTTCCTTAG CCCAACGGCT GTTCCGCGAA
GGGATTGATC AGATTTTGCA GCAGGCTCCC TGCCGGGTGC TGTTGGTCAA ACCCGGGGCT
GCATTCCTGG CCAAGGCGCC ACTCCTGCAG GGCGATCGCC CGACTCTGCC GCTACGCCAT
TGGCTGATTC CCCTCAGCGC CCAGGTGCCC CAGACAGGTT TGGCCGAGCC CTTGGAACAA
ATCCTGCAGT TGATTACCGA TCCAGATATC TCCCTCTGTC AGATCGACCT CCCTCGACAA
ACCGTTTCAG CCAACCGTCT CCAGCAGCTG CAGCGACGAC TGGAGAACCG CCTGCGGCAA
CCCATCCAAG CAGACTTGAT CTGTGCGCGA TCGGTGACAG CAGTGCTATT GGATGTGATG
CAAAGTCGAG GGATCGAAGC GGTGATGCTA TCGATGACCT TGGAACAGCT GCCCACCACA
ACCCTCTGGA AAGATCTGTT AGCACAGGCA CCGCAAACCG TAATCATTCA GAGACGTTAA
 
Protein sequence
MFRLRFPPRF AKAQQWAVLE ACAIGLVSGA SAFLLKLGAT GVQDLRDRPG LPLGLQLLLP 
PILGAIAGWL VQRFAPEAEG SGISQVQAAL SGSRIALNLR VAIVKIASTM LVVGSGLPLG
RQGPTVQVGA SLAGQMSQWF PTSPDYRRQL IASGAAAGLA AGFNAPLAGV MLVLEQLLHD
VSSFTLGTAV LAAFIGAVVS GILGSQSLSF SSEIVAAPAA LTVPELPVVL LLGLFAGGLG
ILFNRGLAFS QRCYERLPLK GLPWRVAIAS GISALLLLLL PAALRQGLSN PFRVTIPDSG
SIALLMLAIN FGLTLVAAGS GASGGIFAPA LVLGSSLGLG VVLSIQAIFL QVGIPLRIDA
PATYALAGMG AMFSAVTQGP ITAIVIVFEM TRDFNAVLPL MVASITAYGI ASLARSPSKA
AAVVDALPTL NSSLGLTAAQ VMASPVETLE ASLPLTEVIQ QFNRTHHRGF PVTQKGALVG
IVTSSDLDEQ TLKGKGESVR LSEIMTPHPL TVAPQDTLAH VLYVLNRFQI SRLPVVDGRK
LVGIITRADI IRAESELLSG QDIAATPIAP SYVAYETRSP ATGQGRLLVL LANPRTAQSL
LQLAAGLASL RNYELECLHL IPVSREADPS QTAVSTLGAR RMLRQAERLG RRWQIPVHTQ
VRVCHDLSAA ILETISDRHI NDLVMGWGGG ASLAQRLFRE GIDQILQQAP CRVLLVKPGA
AFLAKAPLLQ GDRPTLPLRH WLIPLSAQVP QTGLAEPLEQ ILQLITDPDI SLCQIDLPRQ
TVSANRLQQL QRRLENRLRQ PIQADLICAR SVTAVLLDVM QSRGIEAVML SMTLEQLPTT
TLWKDLLAQA PQTVIIQRR