Gene Synpcc7942_1545 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1545 
Symbol 
ID3774969 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1601056 
End bp1601511 
Gene Length456 bp 
Protein Length151 aa 
Translation table11 
GC content52% 
IMG OID637799978 
Productplasmid stabilization protein StbB-like 
Protein accessionYP_400562 
Protein GI81300354 
COG category[R] General function prediction only 
COG ID[COG1487] Predicted nucleic acid-binding protein, contains PIN domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.00762824 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGTTTTTGC TCGATACCAA CGTAATTTCG GAGCTGTTTC GACCAATTCC GAATCCAGCA 
GTGTTGGCTT GGTATGACCA AACCCCAAAA CGAGAACTGT TCTTGAGTGC AATTACGGTA
GCGGAGCTTG ATCAAGGCGT AGCGCTTTTG CCCGAGGGTC GGCGCAAAGA AGGTCTTCGA
GCTGCTGTAA CAACTTTGGT GGAAATGGAT TTTCGCGATC GCGTTTTGAG TTTTGATCTA
GAGGCTGCTT GGCAGTATGG CGTGTTGGTG GAGGCACGAT CGCGCCAAGG ACTCTCGGTT
TCAGTCAATG ATGCTCTGAT TGCGGCGATC GCCCTATCTC GGCGCTGTGT GGTAGTGACG
CGCAATCAGA AAGACTTCTG CGGAGTTGCA GCGCTGCAGA TCTTCAATCC TTTTGAGGCA
GCAGAATCAG GGGATGCAGA CGGTTCTGAC GATTGA
 
Protein sequence
MFLLDTNVIS ELFRPIPNPA VLAWYDQTPK RELFLSAITV AELDQGVALL PEGRRKEGLR 
AAVTTLVEMD FRDRVLSFDL EAAWQYGVLV EARSRQGLSV SVNDALIAAI ALSRRCVVVT
RNQKDFCGVA ALQIFNPFEA AESGDADGSD D