Gene Synpcc7942_1541 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1541 
Symbol 
ID3774965 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1598656 
End bp1599168 
Gene Length513 bp 
Protein Length170 aa 
Translation table11 
GC content40% 
IMG OID637799974 
Productflavodoxin FldA 
Protein accessionYP_400558 
Protein GI81300350 
COG category[C] Energy production and conversion 
COG ID[COG0716] Flavodoxins 
TIGRFAM ID[TIGR01752] flavodoxin, long chain 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.325329 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0252615 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAAAA TTGGCTTATT CTACGGAACT CAAACAGGCG TTACCCAAAC TATTGCTGAA 
TCGATTCAAC AAGAGTTTGG CGGTGAAAGT ATTGTTGACC TCAATGATAT TGCGAATGCT
GATGCCAGTG ATTTAAATGC CTATGATTAT TTAATTATCG GTTGTCCTAC TTGGAATGTT
GGTGAACTGC AAAGTGACTG GGAAGGAATC TATGATGATT TAGACTCAGT CAACTTTCAA
GGGAAGAAAG TTGCCTACTT TGGAGCGGGT GATCAAGTAG GCTATTCCGA TAACTTTCAG
GATGCTATGG GCATTCTAGA AGAAAAAATT AGCTCTTTAG GTAGTCAAAC AGTTGGCTAT
TGGCCTATTG AAGGCTATGA CTTCAATGAG TCAAAAGCTG TACGCAATAA TCAGTTTGTT
GGTTTAGCAA TTGATGAAGA CAATCAACCT GATCTCACAA AGAATCGAAT TAAGACTTGG
GTCAGCCAGC TAAAGTCAGA GTTCGGTCTT TAA
 
Protein sequence
MAKIGLFYGT QTGVTQTIAE SIQQEFGGES IVDLNDIANA DASDLNAYDY LIIGCPTWNV 
GELQSDWEGI YDDLDSVNFQ GKKVAYFGAG DQVGYSDNFQ DAMGILEEKI SSLGSQTVGY
WPIEGYDFNE SKAVRNNQFV GLAIDEDNQP DLTKNRIKTW VSQLKSEFGL