| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1534 |
|---|
| Symbol | |
|---|
| ID | 3774958 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | + |
|---|
| Start bp | 1593215 |
|---|
| End bp | 1595422 |
|---|
| Gene Length | 2208 bp |
|---|
| Protein Length | 735 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637799967 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_400551 |
|---|
| Protein GI | 81300343 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1431] Uncharacterized protein containing piwi/argonaute domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.170844 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.0304463 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCTAC TATCAAATTT GCGGCGATCT TCGATTGTCT TGAACCGATT TTATGTGAAG
TCATTAAGTC AGTCAGATTT GACTGCTTAC GAGTATCGGT GCATTTTTAA AAAGACTCCA
GAGCTAGGAG ATGAGAAACG TTTACTGGCT AGCATTTGCT ATAAGTTAGG TGCAATCGCC
GTCAGGATCG GCAGCAATAT TATCACCAAA GAAGCCGTTA GACCCGAAAA ATTACAGGGG
CATGATTGGC AACTTGTACA AATGGGAACT AAACAGCTCG ATTGCCGTAA TGACGCTCAT
CGATGTGCTT TGGAAACCTT TGAGCGGAAA TTTTTAGAAA GAGACTTGTC TGCTAGTTCT
CAAACAGAGG TCCGAAAAGC AGCTGAAGGG GGATTGATTT GGTGGGTAGT AGGAGCCAAA
GGTATTGAAA AAAGTGGCAA CGGTTGGGAA GTTCATCGCG GTCGAAGAAT TGATGTCAGT
CTAGATGCCG AAGGGAATCT CTATCTAGAA ATTGATATCC ATCATCGCTT CTATACTCCT
TGGACGGTTC ATCAATGGCT AGAACAATAT CCAGAGATAC CTCTCAGCTA TGTTCGCAAT
AACTATCTTG ATGAAAGGCA TGGGTTTATC AATTGGCAAT ATGGCAGGTT CACTCAAGAG
AGGCCGCAAG ATATTTTATT AGATTGTTTA GGAATGAGTT TGGCAGAATA TCATCTTAAT
AAAGGCGCCA CAGAAGAGGA AGTACAGCAG TCTTATGTAG TCTATGTCAA ACCTATTAGC
TGGCGAAAAG GTAAGCTAAC AGCCCATCTC TCACGCAGGC TATCGCCCAG TCTGACCATG
GAGATGCTCG CCAAAGTGGC AGAAGACAGC ACTGTATGCG ATCGCGAAAA ACGTGAAATC
AGAGCTGTTT TTAAGAGCAT CAAACAGTCT ATTAACCAGC GTCTCCAGGA AGCCCAAAAG
ACAGCTAGTT GGATCCTCAC AAAAACCTAC GGGATATCGA GTCCTGCGAT CGCACTCTCT
TGCGATGGTT ATCTGTTGCC TGCCGCTAAG TTACTAGCTG CGAATAAGCA GCCTGTCTCC
AAGACTGCGG ATATTCGCAA TAAAGGATGT GCCAAGATTG GTGAAACCAG TTTTGGCTAC
CTTAATCTTT ATAACAATCA ACTTCAATAT CCTTTGGAGG TTCATAAATG TCTACTGGAA
ATTGCAAACA AGAACAATCT GCAACTATCC CTCGATCAAC GTCGAGTCCT AAGTGATTAT
CCTCAGGACG ATCTCGACCA GCAAATGTTT TGGCAAACTT GGTCTAGCCA AGGAATCAAA
ACTGTTCTAG TCGTTATGCC TTGGGATTCC CATCACGATA AACAGAAAAT TCGTATTCAA
GCGATTCAGG CAGGCATTGC TACTCAATTT ATGGTGCCGC TACCAAAGGC TGATAAGTAT
AAAGCTCTTA ACGTCACTCT TGGACTATTG TGCAAAGCAG GTTGGCAGCC TATCCAACTT
GAATCAGTTG ATCATCCCGA AGTAGCTGAT CTGATTATTG GCTTTGATAC CGGCACGAAT
CGAGAGCTCT ACTATGGAAC TTCTGCCTTT GCCGTTCTTG CTGATGGACA GAGCCTAGGA
TGGGAACTAC CTGCTGTACA GCGGGGAGAA ACATTCTCAG GTCAAGCGAT TTGGCAAACT
GTCTCGAAGT TGATCATCAA GTTTTATCAG ATTTGTCAGC GCTATCCTCA GAAGCTGTTG
TTAATGCGAG ATGGATTAGT CCAGGAGGGT GAATTTCAAC AAACAATCGA GCTACTAAAA
GAGAGAAAAA TTGCTGTTGA TGTTATCAGT GTTCGGAAAA GTGGAGCTGG ACGTATGGGG
CAAGAAATCT ATGAAAATGG TCAGCTTGTC TACCGAGATG CAGCCATCGG TAGTGTAATC
TTACAGCCAG CCGAACGCTC ATTCATCATG GTGACGAGTC AACCTGTGAG TAAAACGATT
GGAAGTATTC GACCACTACG AATCGTGCAT GAATATGGCA GTACGGATCT AGAGCTTTTG
GCTCTGCAAA CCTATCATCT GACCCAGCTT CATCCAGCGA GTGGTTTCCG CTCTTGCCGC
CTTCCTTGGG TGCTGCATTT AGCCGATCGG AGTAGTAAAG AGTTTCAGCG AATTGGACAA
ATTAGTGTTT TGCAAAATAT CAGTCGCGAT AAGTTAATTG CGGTCTAA
|
|---|
| Protein sequence | MDLLSNLRRS SIVLNRFYVK SLSQSDLTAY EYRCIFKKTP ELGDEKRLLA SICYKLGAIA
VRIGSNIITK EAVRPEKLQG HDWQLVQMGT KQLDCRNDAH RCALETFERK FLERDLSASS
QTEVRKAAEG GLIWWVVGAK GIEKSGNGWE VHRGRRIDVS LDAEGNLYLE IDIHHRFYTP
WTVHQWLEQY PEIPLSYVRN NYLDERHGFI NWQYGRFTQE RPQDILLDCL GMSLAEYHLN
KGATEEEVQQ SYVVYVKPIS WRKGKLTAHL SRRLSPSLTM EMLAKVAEDS TVCDREKREI
RAVFKSIKQS INQRLQEAQK TASWILTKTY GISSPAIALS CDGYLLPAAK LLAANKQPVS
KTADIRNKGC AKIGETSFGY LNLYNNQLQY PLEVHKCLLE IANKNNLQLS LDQRRVLSDY
PQDDLDQQMF WQTWSSQGIK TVLVVMPWDS HHDKQKIRIQ AIQAGIATQF MVPLPKADKY
KALNVTLGLL CKAGWQPIQL ESVDHPEVAD LIIGFDTGTN RELYYGTSAF AVLADGQSLG
WELPAVQRGE TFSGQAIWQT VSKLIIKFYQ ICQRYPQKLL LMRDGLVQEG EFQQTIELLK
ERKIAVDVIS VRKSGAGRMG QEIYENGQLV YRDAAIGSVI LQPAERSFIM VTSQPVSKTI
GSIRPLRIVH EYGSTDLELL ALQTYHLTQL HPASGFRSCR LPWVLHLADR SSKEFQRIGQ
ISVLQNISRD KLIAV
|
|---|
| |