Gene Synpcc7942_1522 details

Gene Information

• Locus tag: Synpcc7942_1522
• Symbol: rpoB
• ID: 3774946
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Synechococcus elongatus PCC 7942
• Kingdom: Bacteria
• Replicon accession: NC_007604
• Strand: +
• Start bp: 1573729
• End bp: 1577031
• Gene Length: 3303 bp
• Protein Length: 1100 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637799955
• Product: DNA-directed RNA polymerase subunit beta
• Protein accession: YP_400539
• Protein GI: 81300331
• COG category: [K] Transcription
• COG ID: [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit
• TIGRFAM ID: [TIGR02013] DNA-directed RNA polymerase, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 25
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 0.18343
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCTGAGC AAACGCAACT CGCTCCCGCT GCCTTCCATT TACCTGATCT CGTTGCCATT 
CAACGGAACA GCTTCCGTTG GTTCCTAGAA GAAGGGCTCA TTGAGGAGCT GGAAAGCTTT 
TCACCAATCA CCGACTATAC CGGTAAGCTT GAGCTTCACT TCCTCGGTAA GCAGTATAAG 
CTCAAGCGCC CGAAGTACGA CGTTGATGAA GCAAAACGGC GTGACGGCAC CTACTCGGTT 
CAAATGTATG TGCCGACCCG TTTGATCAAC AAAGAAACGG GCGAAATCAA GGAGCAGGAA 
GTCTTTATTG GCGATCTGCC CCTGATGACT GATCGCGGCA CCTTCATCAT CAACGGTGCC 
GAACGGGTGA TCGTCAACCA GATCGTCCGT AGCCCCGGCG TCTACTACAA ATCAGAGCGC 
GACAAGAACG GTCGCCTCAC CCACAATGCC AGCCTGATCC CCAACCGTGG CGCTTGGCTG 
AAATTTGAAA CCGATAAAAA CGGTTTAGTT TGGGTGCGCA TCGACAAGAC GCGTAAGTTG 
TCGGCGCAGG TACTGCTGAA AGCCTTGGGC CTGAGCGACA ACGAAATTTA CGACAAGCTC 
CGTCACCCTG AGTATTACCA GAAGACCATC GATAAAGAAG GTCAGTTCAG CGAAGACGAA 
GCGCTGATGG AGCTCTACCG CAAGCTCCGT CCGGGCGAAC CGCCCACGGT CTCTGGCGGT 
CAGCAATTGC TGGAATCGCG GTTCTTCGAT CCCAAACGCT ACGACCTAGG TCGGGTGGGC 
CGCTACAAGC TCAATAAGAA GCTGGGTCTC AACGTCGCTG ATACGGTGCG GACGCTGACA 
TCCGAAGATA TTTTGGCGGC GATCGACTAC CTGATTAACC TCGAGCTTGA CTTGGGTGGC 
TGTGAAGTCG ATGACATCGA CCACCTCGGC AACCGTCGGG TGCGATCGGT GGGCGAGCTG 
CTGCAAAACC AAGTGCGGGT CGGCCTCAAC CGCCTAGAGC GGATCATTCG GGAACGGATG 
ACGGTGTCGG ATTCCGACAG TCTTTCGCCG GCTTCCTTGG TCAACCCCAA ACCGCTGGTG 
GCTGCGATCA AAGAATTCTT TGGTTCCTCG CAACTCTCGC AGTTCATGGA CCAAACCAAC 
CCCTTGGCGG AGTTGACCCA TAAACGACGT CTGAGTGCCC TCGGTCCCGG TGGTTTGACA 
CGGGAGCGGG CTGGCTTTGC GGTGCGGGAC ATTCACCCCA GCCACTACGG CCGGATTTGC 
CCGATTGAAA CGCCGGAAGG CCCGAACGCG GGTCTGATTG GTTCCTTAGC GACCCACGCC 
CGCGTCAACG ACTACGGCTT TATTGAAACG CCGTTCTGGC GCGTCGAAGA AGGACGGGTT 
CGCAAGGACT TGGCGCCGGT CTACATGACT GCTGACCAGG AAGATGACCT GCGGGTGGCT 
CCGGGAGACG TGGCTACGGA TGACGCGGGC TACATCCTGG GAACCACAAT TCCGGTACGT 
TATCGCCAGG ACTTCACCAC CACGACGCCG GAGCGGGTGG ACTACGTTGC GCTCTCGCCG 
GTGCAGATTA TCTCGGTGGC AACGTCGTTG ATTCCTTTCT TGGAACACGA TGACGCCAAC 
CGTGCCCTGA TGGGCTCGAA CATGCAACGG CAGGCGGTGC CGCTGTTGCG GCCAGAGCGG 
CCTTTGGTCG GGACGGGTCT GGAGCCCCAA GCGGCCCGTG ACTCAGGGAT GGTGATCACC 
AGCCCGGTCG ATGGCACGAT CTCCTACGTC GATGCCACCC ACATTGAGGT GACGGCTGAC 
ACAGGTGAGA AGTATGGCTA CGCCCTACAG AAGTACCAGC GCTCCAACCA AGATACTTGT 
CTGAACCAAC GGCCGATCGT GTTTGAAGGC GATCGCGTTC AACGGGGTCA GGTGATTGCT 
GACGGTTCTG CCACCGAAAA AGGTGAGCTG GCCCTGGGGC AAAACATCCT CGTCGCCTAC 
ATGCCTTGGG AAGGCTACAA CTACGAGGAC GCGATTCTGA TCAGCGAGCG GCTGGTCTAT 
GACGACGTCT ATACCTCGAT CCACATTGAA AAATTCGAGA TTGAGGCGCG TCAGACCAAG 
TTAGGCCCTG AGGAGATTAC CCGCGAAATT CCCAACGTTG GCGAAGATGC TCTGCGCCAA 
CTCGACGAAA ACGGGATTAT CCGCGTCGGC GCATGGGTGG AGTCCGGTGA CATCTTGGTT 
GGTAAGGTGA CGCCCAAAGG CGAATCGGAT CAGCCGCCAG AAGAAAAACT GCTGCGGGCA 
ATCTTCGGTG AGAAAGCGCG GGACGTCCGC GATAACTCCC TGCGGGTGCC GAATGGTGAG 
AAAGGCCGCG TTGTTGATGT GCGTCTCTTC ACCCGTGAGC AGGGTGATGA GTTGCCGCCG 
GGCGCCAACA TGGTTGTCCG GGTTTACGTG GCTCAGAAAC GCAAGATCCA AGTCGGCGAC 
AAGATGGCGG GTCGCCACGG CAACAAGGGG ATCATTTCGC GGATTCTGCC CTGCGAAGAC 
ATGCCTTACC TGCCGGATGG CACGCCGCTA GACATCGTGC TCAATCCCTT GGGTGTACCC 
TCGCGGATGA ACGTCGGTCA GGTGTTTGAG TGCATGCTGG GCTGGGCGGG TCAGCTGCTA 
GATGCCCGCT TCAAGGTCAC GCCCTTTGAC GAGATGTACG GGGCGGAAGC CTCTCGCTTG 
ACTGTCAACG CCAAGCTGTC TGAAGCGCGG GAGCAAACAG GTCAGCCCTG GGTCTTTAGC 
GATGATGAAC CCGGCAAGAT CCAGGTCTAC GACGGTCGGA CAGGGGAACC CTTCGATCGC 
CCAGTGACGG TGGGTCGTGC CTACATGCTT AAGCTGGTTC ACTTGGTCGA CGACAAGATC 
CACGCTCGCT CGACAGGTCC CTACTCCTTG GTGACCCAAC AACCCTTGGG TGGTAAAGCC 
CAACAAGGGG GTCAGCGCTT CGGGGAGATG GAAGTTTGGG CACTGGAAGC CTACGGTGCT 
GCCTACATCC TGCAAGAGTT GCTGACGGTC AAGTCGGACG ACATGCAAGG GCGGAATGAA 
GCTCTCAATG CGATCGTTAA GGGCAAAGCG ATTCCTCGCC CCGGCACACC AGAGTCTTTC 
AAGGTGTTGA TGCGAGAGCT GCAGTCGCTC TGTCTCGACA TTGCGGTCTA CAAGGCCTCA 
ACCGAGGACT ATGAAGAAGA CAAAGAAGTG GATCTGATGG CGGATGTCAA CCAGCGTCGG 
ACTCCCTCGC GCCCGACCTA CGAGTCGATG TCTGTGGGCG ACATTGATGA CGATGACGAC 
TAA 

 

Protein sequence

MAEQTQLAPA AFHLPDLVAI QRNSFRWFLE EGLIEELESF SPITDYTGKL ELHFLGKQYK 
LKRPKYDVDE AKRRDGTYSV QMYVPTRLIN KETGEIKEQE VFIGDLPLMT DRGTFIINGA 
ERVIVNQIVR SPGVYYKSER DKNGRLTHNA SLIPNRGAWL KFETDKNGLV WVRIDKTRKL 
SAQVLLKALG LSDNEIYDKL RHPEYYQKTI DKEGQFSEDE ALMELYRKLR PGEPPTVSGG 
QQLLESRFFD PKRYDLGRVG RYKLNKKLGL NVADTVRTLT SEDILAAIDY LINLELDLGG 
CEVDDIDHLG NRRVRSVGEL LQNQVRVGLN RLERIIRERM TVSDSDSLSP ASLVNPKPLV 
AAIKEFFGSS QLSQFMDQTN PLAELTHKRR LSALGPGGLT RERAGFAVRD IHPSHYGRIC 
PIETPEGPNA GLIGSLATHA RVNDYGFIET PFWRVEEGRV RKDLAPVYMT ADQEDDLRVA 
PGDVATDDAG YILGTTIPVR YRQDFTTTTP ERVDYVALSP VQIISVATSL IPFLEHDDAN 
RALMGSNMQR QAVPLLRPER PLVGTGLEPQ AARDSGMVIT SPVDGTISYV DATHIEVTAD 
TGEKYGYALQ KYQRSNQDTC LNQRPIVFEG DRVQRGQVIA DGSATEKGEL ALGQNILVAY 
MPWEGYNYED AILISERLVY DDVYTSIHIE KFEIEARQTK LGPEEITREI PNVGEDALRQ 
LDENGIIRVG AWVESGDILV GKVTPKGESD QPPEEKLLRA IFGEKARDVR DNSLRVPNGE 
KGRVVDVRLF TREQGDELPP GANMVVRVYV AQKRKIQVGD KMAGRHGNKG IISRILPCED 
MPYLPDGTPL DIVLNPLGVP SRMNVGQVFE CMLGWAGQLL DARFKVTPFD EMYGAEASRL 
TVNAKLSEAR EQTGQPWVFS DDEPGKIQVY DGRTGEPFDR PVTVGRAYML KLVHLVDDKI 
HARSTGPYSL VTQQPLGGKA QQGGQRFGEM EVWALEAYGA AYILQELLTV KSDDMQGRNE 
ALNAIVKGKA IPRPGTPESF KVLMRELQSL CLDIAVYKAS TEDYEEDKEV DLMADVNQRR 
TPSRPTYESM SVGDIDDDDD