Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Synpcc7942_1464 |
Symbol | |
ID | 3773636 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus elongatus PCC 7942 |
Kingdom | Bacteria |
Replicon accession | NC_007604 |
Strand | + |
Start bp | 1517237 |
End bp | 1518832 |
Gene Length | 1596 bp |
Protein Length | 531 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637799896 |
Product | porin |
Protein accession | YP_400481 |
Protein GI | 81300273 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00000540569 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0535262 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGCC TTTTCTCGGC GCTGCTTCTA GCCCCGGCAA TTGCTGGTGT GGCTGCGGGC GCAGCAAATG CTAACGGTTT AAGCACCGAA CAGCTCCAAA AAATTGACGC TGTAACTCCC AACGGCATCA CCTCCGGTCA GATCACTTCG ATCACCGAAT TGAGTGATGT CAAGCCGACT GACTGGGCTT ATCAAGCATT GCAGTCGCTA GTTGAGCGTT ATGGCTGCAT CGTCGGCTAC CCTGATCGGA CTTACCGTGG TAGCCGCCCC CTCTCTCGTT ATGAGTTTGC AGCAGGCTTG AACGCTTGCT TGGACAAAGT CATTGAATTT GCAGCGTCGA AAGAGGATCT CGACACCCTC AAGCGACTGA CTGAAGAATT CCAAGCTGAG CTGGCGACCC TGCGTGGTCG TGTTGATAGT CTCGAGGCTC GTGTTAAAGA GCTCGAAGCT ACCCGTTTCT CCACCACGAC TAAGCTACAA GGTGAAGTAA TCTTCAGCTT GGACGCTGTT GCTAATACTG CTGGCAACGA ACGTAACCAA GACGGTGCTG TATCGTTCGG CAACCGCGTC AGCTTGAACC TCAACACGAG CTTCACTGGC AAAGACTTGC TATTGACCCG TCTGCGCGCT CGTAACATTG AGACGATTCA GCAGCGCTTG TCGCCTGGCT TTAATCCCTC GGGCTCGCGG CTCGACTACG ACGGTACCGG TTCGCCTGGT GTCCCGAATT CGGCTAATAC CTTTTTCCTT GACAAATTGC TGTACCGCTT CCCCGTCGGT GATGTCTCCT TCACTGTTGG TACCGCGGGC GTTCAACCTC AAGACTACGG CCTGAGCGAC GCTACCTTCT TCAGTGGCCC TGCGAACACG AAAGCCTTCA AGTATGTCGG TGCAGGTGTT TACGCTGATA CTCGTGATGC TGATACCGCT GGTGTTGGCT TCAACTGGAA GGCTAGTAAG AATTTCAGCT TCCAGGCTGG CTACATCAAC CGCAACTCTG CTGATGTCTC GACTGTCAAC AGTGGTGGTG TCTTTGGCTT CACCCCGACA GGGACTGGTA CTAACTCTTG GGATGTGAAT GCTCAAGTCA AGTACCAAAC TGATAACAAC AAGTTCCGAG TTGCTCTGGC CTACGCTCTG CGAAATGGTC GCTACGCCAC TGACTTCGGT ACCACCAACG CCTTCCAGCC TTTTGGTGCT ACCAACTACA ACAGCAACAA CCTTGCTCTC TCCTTGGGTT GGGCAATTTC TGATGCTGTG ACCTTGTCAG CCGGCTACGG CATTGGCTTT GTCAATGAGC AAGGTACGAA CCAAAACGCG ACTGTTCAGA ACTACGCAAT TGGCTTGACC TTCCCTAACC TGTTTGCTGA TGGCAACGAG TTTGGTGTTG CAGCAGGCCA ACAACCTTGG GTCAGCAGCG CTTCTAACCG TTCGTCTGAA GACACTGGTT CCTTTGGTGT TGAAACCTAC TACAAATTCC AAGTGACGGA CAATATCTCC ATCACTCCTG GTATTTACGT GTTCAACAAC ACCAATGGCC AGCAAAACGG TGGAACGACT TACGTTCCCT TCCTGAAAAC AGTCTTCCGT TTCTAG
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Protein sequence | MKRLFSALLL APAIAGVAAG AANANGLSTE QLQKIDAVTP NGITSGQITS ITELSDVKPT DWAYQALQSL VERYGCIVGY PDRTYRGSRP LSRYEFAAGL NACLDKVIEF AASKEDLDTL KRLTEEFQAE LATLRGRVDS LEARVKELEA TRFSTTTKLQ GEVIFSLDAV ANTAGNERNQ DGAVSFGNRV SLNLNTSFTG KDLLLTRLRA RNIETIQQRL SPGFNPSGSR LDYDGTGSPG VPNSANTFFL DKLLYRFPVG DVSFTVGTAG VQPQDYGLSD ATFFSGPANT KAFKYVGAGV YADTRDADTA GVGFNWKASK NFSFQAGYIN RNSADVSTVN SGGVFGFTPT GTGTNSWDVN AQVKYQTDNN KFRVALAYAL RNGRYATDFG TTNAFQPFGA TNYNSNNLAL SLGWAISDAV TLSAGYGIGF VNEQGTNQNA TVQNYAIGLT FPNLFADGNE FGVAAGQQPW VSSASNRSSE DTGSFGVETY YKFQVTDNIS ITPGIYVFNN TNGQQNGGTT YVPFLKTVFR F
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