Gene Synpcc7942_1439 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1439 
Symbol 
ID3773611 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1492429 
End bp1494030 
Gene Length1602 bp 
Protein Length533 aa 
Translation table11 
GC content55% 
IMG OID637799871 
ProductNAD(P)H-quinone oxidoreductase subunit 4 
Protein accessionYP_400456 
Protein GI81300248 
COG category[C] Energy production and conversion 
COG ID[COG1008] NADH:ubiquinone oxidoreductase subunit 4 (chain M) 
TIGRFAM ID[TIGR01972] proton-translocating NADH-quinone oxidoreductase, chain M 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.13982 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAAGCG AACAATTTCC CTGGCTTACA GGCATTATCC TGCTGCCGAT CTTGGCAGCG 
CTTCCCATCC CACTGATCCC TGACAAGGAC GGTCGGACAG TCCGCTGGTA CTCCTTATTT
GTGGGGCTGG CGGACTTTGC GTTGATGGTC TACGCCTTCT GGCAGCATTT CGATCGCAGT
GAAGCAGGGC TTCAGATGGT CGAAAAGATT AGCTGGGTGC CGCAAATCGG GCTCAACTGG
TCCTTAGCTG TCGATGGTCT ATCGATGCCC TTGGTTCTGC TGACTGGCTT GGTCACCACC
CTGGCAATCC TGGCCTCGTG GAACATCAAC GTTAAACCCA AGTTGTTCCA CTTCCTATTG
CTGCTGCTCT ACGGCGCTCA GATTGCCGTG TTCACAGCTC AAGACATGAT GCTCTTCTTC
CTTGTCTGGG AACTGGAGCT GGTTCCGGTC TACCTGCTGA TCTCGATTTG GGGTGGCCCC
AAACGGCAGT ACGCGGCAAC CAAATTCATC CTTTACACTG CCTTAGCCTC CTTATTCATC
TTGGTGGCTG GTCTGGCTTT AGCCTTCAGT GGCGACAGCT TTAGCTTTGA CCTGACTGAA
CTTGGCCTTA AGGATTACAG CCTCTGGTTG GAATTACTGG CCTACGCTGG TTTCTTGATC
GCCTTTGGCG TCAAGCTGTC GATCTTCCCG CTCCATACGT GGTTGCCGGA TGCCCACGGC
GAAGCCAATG CACCCGGTTC GATGCTGCTG GCCGGCATTC TCTTGAAGAT GGGCGGCTAC
GCGCTGATTC GCTTTAACGT GCAGCTTCTG CCAGAGGCGC ATATCCGTTT TGCACCTGTT
CTTGCCGTGC TTGGCATTGT CAACATCATC TACGGCGCGC TTAATGCCTT TGCCCAGGAC
AACCTGAAGC GCAAGATCGC CTACTCCTCG ATCTCGCACA TGGGCTTTGT CCTTTTGGGA
ATTGCCGCTT ACAACAGCTT GGGATTGAAT GGCGCTCTGC TGCAGATGCT CTCCCATGGT
CTGATTGCAG CGGCACTCTT CTTCTTGGCC GGTGTTGCCT ACGAGCGCAC CCACACGCTG
CAGATTCCCC AAATCAGTGG GCTTGCCAAG CAAATGCCGA TTACCTTCGC TCTCTTTACC
GTCACCGCCA TGGCATCCTT AGCGCTGCCC GGCATGAGTG GCTTTGTCAG CGAACTAACG
GTGTTCTTGG GCTTTACCGA TAGCGTTTAC AGCAGTGGTT TCCGAACCGT CACGATTCTG
CTGGCGGCTG TTGGTCTCGT CTTGACGCCG ATGTATCTGC TCTCGATGCT GCGGCGGATC
TTTTACGGCA CCTACAACAT CCAACTGGGG CAAGTTCTGG CTGATGCCAA ACCTCGAGAG
CTATTCGTTG CCTTCTGCCT CTTGGTTCCG ACCCTAGCGA TCGGTTTCTA TCCGAAGCTG
ACGACGCAGG TGTACGACGT GACCACGACG GCTCTGGCGG CTCAGGTACA GTCCAACTTG
CCGGTCGTGG CGCTGGCCCA GCAGGGAAGT CTCTACTCCC AGATGCCGGC TGCTGAAGAA
GCCACTGCGG TCTCGATGAC TGCTCCGCCT GTGATCGACT GA
 
Protein sequence
MTSEQFPWLT GIILLPILAA LPIPLIPDKD GRTVRWYSLF VGLADFALMV YAFWQHFDRS 
EAGLQMVEKI SWVPQIGLNW SLAVDGLSMP LVLLTGLVTT LAILASWNIN VKPKLFHFLL
LLLYGAQIAV FTAQDMMLFF LVWELELVPV YLLISIWGGP KRQYAATKFI LYTALASLFI
LVAGLALAFS GDSFSFDLTE LGLKDYSLWL ELLAYAGFLI AFGVKLSIFP LHTWLPDAHG
EANAPGSMLL AGILLKMGGY ALIRFNVQLL PEAHIRFAPV LAVLGIVNII YGALNAFAQD
NLKRKIAYSS ISHMGFVLLG IAAYNSLGLN GALLQMLSHG LIAAALFFLA GVAYERTHTL
QIPQISGLAK QMPITFALFT VTAMASLALP GMSGFVSELT VFLGFTDSVY SSGFRTVTIL
LAAVGLVLTP MYLLSMLRRI FYGTYNIQLG QVLADAKPRE LFVAFCLLVP TLAIGFYPKL
TTQVYDVTTT ALAAQVQSNL PVVALAQQGS LYSQMPAAEE ATAVSMTAPP VID