Gene Synpcc7942_1400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1400 
Symbol 
ID3774113 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1451255 
End bp1452376 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content54% 
IMG OID637799832 
Productendo-1,4-beta-xylanase 
Protein accessionYP_400417 
Protein GI81300209 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3693] Beta-1,4-xylanase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.0516827 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.956406 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGATTGGTC ATACGCTGAG GAGACGCCAG TTTTTGCAGG GACTTTGTGG TGCGTCTGCA 
GTTCTACTCG CCCAGCAAGT CCAAGCTGCA CCGGCAAGAT TGCGATCGCT GGCAGAGTTA
GCACAACAGC GATCGCTCCT GTGGGGATCT GCCATTACGA CTGACATGTT GGCCATTCCA
GACTTAGCAG CACTCTATCG TCAGCAAACG AGTCTCTTGG TGCCGGAATG GGAAATGAAG
TGGGAGGTGT TGCAACCGAG CCCCGATCGC TTTGACTTTA GCCGCTCGGA TCGCTTACTC
GCTTTTGCGC AGTCCTATCA AGCCCAGTTG CGCGGTCACA CGTTGCTCTG GCATCAGCAA
TTGCCGCAGT GGCTAGCATC CTTGACAGCG GCTGAGACAG CAACAGCCCT GCAACGCTAT
ATCACCACCG TTGTTGGTCA CTATCGCGGT CACCTGCAAT CTTGGGATGT GATTAACGAA
CCGATCGCCG AAAATGGACA AGGACTCCGT CCCAATCTTT GGTTACGGCA GCTAGGGCCT
AGTTATTTAG AGAAGAGCCT GCGCTGGGCA AGAGCGGTCG ACCCGACAGT TCCCTTGGTC
ATTAATGACT TCGGTCTGGA ACCTGATAGC CCCCTCGCGA CTCGTAAACG TCTGCAGCTA
CTGCGTCTCG TTCAGGAATT GCGCGATCGC GATACTCCCC TTCAGGCGAT CGGGTTCCAA
GCTCACTTGG TCGCTAACCC CCAAGCACCT CCCAGCTTCA CTGGTTTTGC TGAGTTTTTA
GCGGACTTGA GTCGCTTTGA TCTCGACTTC TACATTACAG AATTAGACGT CAATGATCAG
GCTTTACCGG CCAATAATGC TGAGCGCGAT CGCGAAGTTG CCCAGACCTA TCAGCGTTTC
TTGAGTGCAG TTCTACCGCT TCCTCGCCTC AAGTTAGTGA CCACTTGGGG GCTCAGCGAT
CGCTTCACTT GGCTTAATCA GTTTGCACCT CGGGCAGATG GACTACCTCA GCGTCCACTC
CCGTTTGATT CCGTTTTTCA ACCCACTGAG ACCTATGGCA ACCTCATCAC CCTCCTCCAA
TCAGTTTCAA ACGGACCCAA CAGCAGCACC TCAACGCAGT AG
 
Protein sequence
MIGHTLRRRQ FLQGLCGASA VLLAQQVQAA PARLRSLAEL AQQRSLLWGS AITTDMLAIP 
DLAALYRQQT SLLVPEWEMK WEVLQPSPDR FDFSRSDRLL AFAQSYQAQL RGHTLLWHQQ
LPQWLASLTA AETATALQRY ITTVVGHYRG HLQSWDVINE PIAENGQGLR PNLWLRQLGP
SYLEKSLRWA RAVDPTVPLV INDFGLEPDS PLATRKRLQL LRLVQELRDR DTPLQAIGFQ
AHLVANPQAP PSFTGFAEFL ADLSRFDLDF YITELDVNDQ ALPANNAERD REVAQTYQRF
LSAVLPLPRL KLVTTWGLSD RFTWLNQFAP RADGLPQRPL PFDSVFQPTE TYGNLITLLQ
SVSNGPNSST STQ