Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Synpcc7942_1400 |
Symbol | |
ID | 3774113 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus elongatus PCC 7942 |
Kingdom | Bacteria |
Replicon accession | NC_007604 |
Strand | - |
Start bp | 1451255 |
End bp | 1452376 |
Gene Length | 1122 bp |
Protein Length | 373 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 637799832 |
Product | endo-1,4-beta-xylanase |
Protein accession | YP_400417 |
Protein GI | 81300209 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3693] Beta-1,4-xylanase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.0516827 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.956406 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGATTGGTC ATACGCTGAG GAGACGCCAG TTTTTGCAGG GACTTTGTGG TGCGTCTGCA GTTCTACTCG CCCAGCAAGT CCAAGCTGCA CCGGCAAGAT TGCGATCGCT GGCAGAGTTA GCACAACAGC GATCGCTCCT GTGGGGATCT GCCATTACGA CTGACATGTT GGCCATTCCA GACTTAGCAG CACTCTATCG TCAGCAAACG AGTCTCTTGG TGCCGGAATG GGAAATGAAG TGGGAGGTGT TGCAACCGAG CCCCGATCGC TTTGACTTTA GCCGCTCGGA TCGCTTACTC GCTTTTGCGC AGTCCTATCA AGCCCAGTTG CGCGGTCACA CGTTGCTCTG GCATCAGCAA TTGCCGCAGT GGCTAGCATC CTTGACAGCG GCTGAGACAG CAACAGCCCT GCAACGCTAT ATCACCACCG TTGTTGGTCA CTATCGCGGT CACCTGCAAT CTTGGGATGT GATTAACGAA CCGATCGCCG AAAATGGACA AGGACTCCGT CCCAATCTTT GGTTACGGCA GCTAGGGCCT AGTTATTTAG AGAAGAGCCT GCGCTGGGCA AGAGCGGTCG ACCCGACAGT TCCCTTGGTC ATTAATGACT TCGGTCTGGA ACCTGATAGC CCCCTCGCGA CTCGTAAACG TCTGCAGCTA CTGCGTCTCG TTCAGGAATT GCGCGATCGC GATACTCCCC TTCAGGCGAT CGGGTTCCAA GCTCACTTGG TCGCTAACCC CCAAGCACCT CCCAGCTTCA CTGGTTTTGC TGAGTTTTTA GCGGACTTGA GTCGCTTTGA TCTCGACTTC TACATTACAG AATTAGACGT CAATGATCAG GCTTTACCGG CCAATAATGC TGAGCGCGAT CGCGAAGTTG CCCAGACCTA TCAGCGTTTC TTGAGTGCAG TTCTACCGCT TCCTCGCCTC AAGTTAGTGA CCACTTGGGG GCTCAGCGAT CGCTTCACTT GGCTTAATCA GTTTGCACCT CGGGCAGATG GACTACCTCA GCGTCCACTC CCGTTTGATT CCGTTTTTCA ACCCACTGAG ACCTATGGCA ACCTCATCAC CCTCCTCCAA TCAGTTTCAA ACGGACCCAA CAGCAGCACC TCAACGCAGT AG
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Protein sequence | MIGHTLRRRQ FLQGLCGASA VLLAQQVQAA PARLRSLAEL AQQRSLLWGS AITTDMLAIP DLAALYRQQT SLLVPEWEMK WEVLQPSPDR FDFSRSDRLL AFAQSYQAQL RGHTLLWHQQ LPQWLASLTA AETATALQRY ITTVVGHYRG HLQSWDVINE PIAENGQGLR PNLWLRQLGP SYLEKSLRWA RAVDPTVPLV INDFGLEPDS PLATRKRLQL LRLVQELRDR DTPLQAIGFQ AHLVANPQAP PSFTGFAEFL ADLSRFDLDF YITELDVNDQ ALPANNAERD REVAQTYQRF LSAVLPLPRL KLVTTWGLSD RFTWLNQFAP RADGLPQRPL PFDSVFQPTE TYGNLITLLQ SVSNGPNSST STQ
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