| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1393 |
|---|
| Symbol | |
|---|
| ID | 3774106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | + |
|---|
| Start bp | 1442504 |
|---|
| End bp | 1443418 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637799825 |
|---|
| Product | histone deacetylase/AcuC/AphA family protein-like |
|---|
| Protein accession | YP_400410 |
|---|
| Protein GI | 81300202 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.194758 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.700999 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGACCTGC CGTTGGTCTA TCACCCAGGC TATTCTGCGC CACTGCCATC GACCCATCGC
TTTCCGATGG CTAAGTTTCG GCTTCTTCAC GATCGCCTAC TGCGTGAACG GGTAGTCTAT
CCTCAACAGT TTCACCAGCC CGATCGCCCA CCACTGGAAT GGCTGACCTC GGTTCATAGC
CTTGATTACA TTCAGGCTTA TAGCCAAGGA ACGCTCGACG AGCGATCGCT ACGCCGAATT
GGCCTGCCCT GGAGTCCTGC CCTAGTTGAA CGAACTTGGA TTGCGGTTGG CGGCACGATT
CTGACGGCAC GTCTAGCTCT GCAACAGGGA TTGGCCTGTA ATTTGGCCGG TGGCACCCAC
CACGCCTTCC CTGACTACGG ATCGGGCTTC TGCATCTTCA ACGACTGTGC GATCGCGGCC
AGACTATTGC TACAAGAACG GCTCGTTGAA CGGATTTTGA TCGTCGATTT GGACGTTCAC
CAAGGAGATG GCACAGCCTG GATTTTCCAG GATGACCCGA GAGTCTTTAC CTTCTCAATG
CACTGTGAGG CGAACTTCCC GGCCCGCAAG CAGCACAGTG ACTGTGACGT TCCCTTGCCT
GAGGGCATGG AGGATGATGC CTATCTGCAA CAACTCGCCC AGTACCTGCC GGATCTGCTC
AGTCAAGTCC GCCCTAACTT GGTGATTTAC AACGCTGGTG TTGATCCCCA TGGGGGCGAT
CGCCTTGGCA AGCTTGCCCT GACTGATACT GGACTCTTCC GCCGAGAAAT GCAGGTGCTG
GAAACCTGTG TGCGTCAAGG GTATCCCGTT GCTGCTGTGC TAGGTGGCGG CTATTGCGAA
GACTTCAACG CTTTGGTCTA CCGTCATTCC CTTTGCCAAC GCGCCGCTAG CGATGTCTAT
CGAACATGGT TGTGA
|
|---|
| Protein sequence | MDLPLVYHPG YSAPLPSTHR FPMAKFRLLH DRLLRERVVY PQQFHQPDRP PLEWLTSVHS
LDYIQAYSQG TLDERSLRRI GLPWSPALVE RTWIAVGGTI LTARLALQQG LACNLAGGTH
HAFPDYGSGF CIFNDCAIAA RLLLQERLVE RILIVDLDVH QGDGTAWIFQ DDPRVFTFSM
HCEANFPARK QHSDCDVPLP EGMEDDAYLQ QLAQYLPDLL SQVRPNLVIY NAGVDPHGGD
RLGKLALTDT GLFRREMQVL ETCVRQGYPV AAVLGGGYCE DFNALVYRHS LCQRAASDVY
RTWL
|
|---|
| |