| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1382 |
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| Symbol | |
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| ID | 3775576 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | + |
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| Start bp | 1427042 |
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| End bp | 1429711 |
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| Gene Length | 2670 bp |
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| Protein Length | 889 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637799814 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_400399 |
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| Protein GI | 81300191 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.231857 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.133175 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCTGG CCTCCTTTAT GGGATTGACC GCTCCCACGA GCCTGCGCTT GCATTCTCGG
CGCTTCTGGC TAGGTAGTCT TGTCACTTTC CTCTTGTTTT GGGGCTTTGC CCGCTTGGGA
ATTGCCTATG GTTCTCTGCC CCCCAGTAAC CTCACGGTCG TTTGGCTGCC AGCAGGTATT
GGTTTAGCAG CCTGCATCAC CATGGGCTAT CGAGCCATCC CGGCAATTTG GCTCGCTGCT
TTGCTGATTA ATTTACAAGA CTTTACACAG TTGGGGCGCT TGGACTGGGG AACCGAGCTA
CTTCATAGCT TTCTGGCTGC ACCAATTAAT GCCAGTCAGG CGGCGATTGC CTACACCCTA
TGGCGGCGAT TTTTGGGAGA GCCGATTCAA AAAATTCATC AGCTTGGGCA ATTGGTAGCT
TGGGTCTGTC TTTTGCCAAC TGCATTGACT CTACCGTTAC TTGTTGCCAA TCAAGCTTTT
GGTGGCTTCT TACCTTGGCA GGAAGTTCCT GAGAGTTTGA TCACCATTTG GATGGGAGAC
TCTCTAGGAA TTTTCTTGGT TTTGCCTCTG TATGATGCTT GGCGGCAAAG TAAAACGATA
AACCAAAGCA AGTTTCTGTG GCTGGGGCTG GGTGTTCTCT CCCTAGTGAT AGTGCTGACC
TTAACTTTTG TTCTCTATCC CGTTCTGCTA GGCATCTCAC TGCTTGCTCT ACTAGGTTTG
GCCTTACGAG TCGGTTTGCT CGGGAGTGCC ATTGGCGCCA CATTACTCTC AGTTATTTCA
CTCCTTGCTA CTCGCCGGGG GCTAGGGCCT TTCATTCGTT TAGCACCAGA TAATCCCTAT
CTAGCAGTCA TCTTGCTGAT GTTTAGTATC AGCTTGGCGG TTCATATCGT TGCGCTGCAA
TATGCTGAGC TAAGGCGTCA GCGTGATCAC TTACAAGCCA TTATCAATGA GCAAACAAAT
TATTTAATTG ATGAAATCGA AGCCCTTGAT AAAACCCAAA AAGAGCTAGA AGACGCTAGG
GATTTTGCAG AAAATCTTAT TCAAACAGCG AATGCCATTG TCCTTCTCCT CGATTTAAAT
GGGTGCATTC TTGAGTTGAA CCCAACCGCT GAGGAAGTCA CTGGCTACCA AAGGTCAGAA
ATCCTCGGAA AAGACTGGTT TGAATCTATT GTCCCCCGCG ATCGCTATCC GCATGTCTGG
GAGCAGTTTA AGAACTGTAG CTCTGAAGAA ATCCCTCACA ATTTTGAAAA TCCAATTATT
ACTAAGTCTG GCAAGGAACG CTATATTGTC TGGCGCAACA GCAAAATTTT CAAAAACAAT
GAATGTGTTG GCTTCATCTC CTTTGGGATT GATATTACTG ATCGCCGAGA TAACGAAAAG
GCGCTAGAGC GCCAGGCTTG CTACGACTTC TTGACTGGTC TGGCAAACCG TTTCTTGTTA
CAAGAACAAG GACAAGAGTT GCTGTTGCTG GCAAAAAGAA GTCAAGAGAT GCTGGCAGTT
ATTTTTATTG ACCTCGATCG CTTCAAGGAT ATTAATGATA ATTTCGGCCA CGAAGTAGGC
GATCGCGTTT TAGTAGAGGT TGCTCAACGA ATCAGACAAT CAGTACGACA GAGTGATCTC
ATCGCTCGCT TGAGCGGCGA TGAGTTTGTC GTCATTCTCC CCAACACTGA TGCACAGGGG
GCCGCCACAC TGGCCCAAAA GCTGCAGCAA CAAATTACGC CACCGATCGC GATCGGCGAT
CGCTCAATTC AACTCACAAC CAGTCTTGGT ATTAGTCTCT TCCCTGTCGA TGGCGATGAT
CTGGAAATCT TGATCAAGAA AGCTGACACA GCAATGTACA GCATCAAAGA AGGTGGGCGA
GATGCCTTTA GCTTCTTTAC CGCCACTATT GGCCAGCGCT TACAAGAACG CTTGGAGATT
GAATCAGGCC TTCGATCGGC GATCGCTAAT CAGCAGTTCG AACTTTTCTA TCAACCCCAA
ATTAGCCTCC AAGACGACAG CATCATTGGA CTCGAGGCTT TGCTGCGTTG GCATCACCCC
CACCTAGGCC TACTGACCCC CAAAAGTTTT CTGCCGATTG CGATTGAAAT CGGTCTAATG
GAAGAAATTC AGCAGTGGGT TCTCAAAACA GCTTGTACAC AAAATGCAGT CTGGCAAGCC
CAAGGCTTAA AATCAGTGCC TATTGGGATT AATTTCTCCG GCTTTCAGAT ACAAGAATTC
TGTCCTCAAA TTTTTGAGAT TCTGAATGAA ACTACCCTAC GTCCTCAATA TCTTGAACTA
GAGTTGAATG AAGCGATTCT TGCGGATCCG GATTCTGGGC TCAAACAAGG TCTAATTCAG
CTCAAGAATC TTGGCCTGAA GATTACAGTT GATGACTTTG GCTGCTCTGA TTCAACCCTT
GCCTCTCTTC AGAATAAAGG TCTGAATCGT TTGAAAATTG ATGCTTCTTT AATTCAAGCT
TTAGAGGTGG ACCAAGCAAT TCAGACGATT GTGTCCGCAA TTATTGACTT AGGCCATAAG
TTAGAACTTC GAGTATTGGC TGAAGGTGTC GAAACTGAAT TCCAAAGACA GTGGCTGCAA
GAGCATCAGT GTCACGAAAT TCAGGGGTAT CTGGTCTACT TGCCGCTGCC AGCTGAGGAC
ATTCCAGCAA TTTTGCGGGA GCAGCAATAG
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| Protein sequence | MSLASFMGLT APTSLRLHSR RFWLGSLVTF LLFWGFARLG IAYGSLPPSN LTVVWLPAGI
GLAACITMGY RAIPAIWLAA LLINLQDFTQ LGRLDWGTEL LHSFLAAPIN ASQAAIAYTL
WRRFLGEPIQ KIHQLGQLVA WVCLLPTALT LPLLVANQAF GGFLPWQEVP ESLITIWMGD
SLGIFLVLPL YDAWRQSKTI NQSKFLWLGL GVLSLVIVLT LTFVLYPVLL GISLLALLGL
ALRVGLLGSA IGATLLSVIS LLATRRGLGP FIRLAPDNPY LAVILLMFSI SLAVHIVALQ
YAELRRQRDH LQAIINEQTN YLIDEIEALD KTQKELEDAR DFAENLIQTA NAIVLLLDLN
GCILELNPTA EEVTGYQRSE ILGKDWFESI VPRDRYPHVW EQFKNCSSEE IPHNFENPII
TKSGKERYIV WRNSKIFKNN ECVGFISFGI DITDRRDNEK ALERQACYDF LTGLANRFLL
QEQGQELLLL AKRSQEMLAV IFIDLDRFKD INDNFGHEVG DRVLVEVAQR IRQSVRQSDL
IARLSGDEFV VILPNTDAQG AATLAQKLQQ QITPPIAIGD RSIQLTTSLG ISLFPVDGDD
LEILIKKADT AMYSIKEGGR DAFSFFTATI GQRLQERLEI ESGLRSAIAN QQFELFYQPQ
ISLQDDSIIG LEALLRWHHP HLGLLTPKSF LPIAIEIGLM EEIQQWVLKT ACTQNAVWQA
QGLKSVPIGI NFSGFQIQEF CPQIFEILNE TTLRPQYLEL ELNEAILADP DSGLKQGLIQ
LKNLGLKITV DDFGCSDSTL ASLQNKGLNR LKIDASLIQA LEVDQAIQTI VSAIIDLGHK
LELRVLAEGV ETEFQRQWLQ EHQCHEIQGY LVYLPLPAED IPAILREQQ
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