| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1374 |
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| Symbol | |
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| ID | 3775568 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | - |
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| Start bp | 1414283 |
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| End bp | 1415914 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637799806 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_400391 |
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| Protein GI | 81300183 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.302563 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGCGA TTGCCATGAC TCCCTTAGCT CATTGGCTGG AGACGACTGC CTCCGCTGAT
TTAGGGCCTG CTCGCTACTG GTACGAGGCT GCTTGCCCGC GCACCCAACG CTGGCTACGG
TTACCCCGTA CGGTCCTAGC GGAACAGTTA GCAGTGCAGC TGATGCAACG GCTGGAGATC
CAAGGGCTGC CGCTGTTGGA AGGCAAGATG TTTGGCCTGC TGATCGCTGC CAACGATCAG
GGCGATCGTT TTGTCCTGCA AGCTTTCTCG GGATCGCTAC AGGGTAAAGC CGAATGGCCG
GGCTGGGTGC CGCCAATTCC GGGGCGGGAA CGAACGCGGC TGCAGGAAGA ATTGACGTTG
CTGGAACTGC AGGAGATTCG GACTGCACTG CAAGACAATC AGCAGCACCC TATCCGTGCG
GAACTCAAAA CAGCGGAACA GGTCTGGCAA AATCGCCTAG ACCAGCTCAA AGCGGAACAG
CAGCAACGCC GGTTGCAACG GCAACAGGAT CGCGAGCAGG CGATCGCCCA ACTTACGGGC
GAAGCACTAG CGCACCGTCT CTGGGAAATC GAACAAGCGG GGGCTGACGA TGGATTTGCG
CGATCGCGCC TCAAACAGGC TCGTCGACAG GAATTAGCAG CCTTGCAAGC TCAGGTGGCT
GAACTGGAGG CTGAGTGGTT GCGACTGCGT CGCCGTCGGC GCGCCATTTC TCAAGCCTTG
CAAACGGCCA TGCATCAAAG CGCCACTTTG CGCAGTTTTG ATGGTGTGGA ACAGGCAATC
GCCAGTTTAG GCCGTCTGCC CACGGGCACC GGTGATTGTT GCCTGCCGAA GCTCTTGCAT
TGGGCGGGGG TAGCGGGCCT GACCCCCCTT TCGATCGCGG AATTTTGGTG GGGCCCCCCG
CTCAGCGATC GCCAAGCGGG GCAATTTTAC GGGCCTTGCC GCGATCGCTG CCAGCCAATT
TTGGGCCACC TTCTAGCTGG ATTGCCACCC AGTTCAGATG AGCCGCTGGA ACTGCCAATT
CTTTATGAAG ATGCGGATCT GTTAGCGATC ATCAAACCAG CCGGACTGCT GTCGGTGCCC
GGTACGAGGG GTTTGCAGCA GGCCAGTGCC ATTCAGCTGT TACGCCAGCA GTTTCCAGAT
CTGCCGACCT ACTGCGTGGT TCACCGTCTT GATCAAGCAA CATCGGGCAT TCTCTTAGTG
GCTCGCAATC GCCCCACACA AGTGGCTTTG TTTGAACAAT TTCGCCGCCG GCAAGTTCAT
AAAGTCTACG AGGCACTGTT GGAGGGTCAG CCCGATTGCA CTGCAGGGAC GATCGATTTA
CCTTTGCGGC CCGACTGGAC GCGGCGACCC TATCAACTCG TCGATCGAGA TCGCGGCCGT
CCAGCGCTGA CTTACTATCG CTGCATCGAC CAAACAGGCG ATCGCTGTCG CATGGAGCTG
GAGCCTATTA CTGGCCGCAC GCATCAATTG CGAGTTCACA TGGCGCATCC TGAGGGATTA
GGGCAACCCA TTCTCGGCGA TGATCTCTAC GGACAAAGCA GCGATCGCCT CTATTTACAT
GCGCGATCAA TTCGCTTTCG GCACCCCAGC CAGCTCGACT GGATTCAGCT GACCACAGAC
ACCCCTTTTT GA
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| Protein sequence | MTAIAMTPLA HWLETTASAD LGPARYWYEA ACPRTQRWLR LPRTVLAEQL AVQLMQRLEI
QGLPLLEGKM FGLLIAANDQ GDRFVLQAFS GSLQGKAEWP GWVPPIPGRE RTRLQEELTL
LELQEIRTAL QDNQQHPIRA ELKTAEQVWQ NRLDQLKAEQ QQRRLQRQQD REQAIAQLTG
EALAHRLWEI EQAGADDGFA RSRLKQARRQ ELAALQAQVA ELEAEWLRLR RRRRAISQAL
QTAMHQSATL RSFDGVEQAI ASLGRLPTGT GDCCLPKLLH WAGVAGLTPL SIAEFWWGPP
LSDRQAGQFY GPCRDRCQPI LGHLLAGLPP SSDEPLELPI LYEDADLLAI IKPAGLLSVP
GTRGLQQASA IQLLRQQFPD LPTYCVVHRL DQATSGILLV ARNRPTQVAL FEQFRRRQVH
KVYEALLEGQ PDCTAGTIDL PLRPDWTRRP YQLVDRDRGR PALTYYRCID QTGDRCRMEL
EPITGRTHQL RVHMAHPEGL GQPILGDDLY GQSSDRLYLH ARSIRFRHPS QLDWIQLTTD
TPF
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