| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1372 |
|---|
| Symbol | |
|---|
| ID | 3775566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | + |
|---|
| Start bp | 1409560 |
|---|
| End bp | 1413132 |
|---|
| Gene Length | 3573 bp |
|---|
| Protein Length | 1190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637799804 |
|---|
| Product | methionine synthase (B12-dependent) |
|---|
| Protein accession | YP_400389 |
|---|
| Protein GI | 81300181 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.477278 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAGCC TCTTCCTCGA CCGTCTGCAT AGCCCTGAGC GGCCCGTGCT GGTTTTTGAT
GGCGGCATGG GAACGACGTT GCAGTTTCAG AATTTGACCG CTGAGGATTT CGGGGGCCCG
GAAACCGAGG GCTGTAATGA GTGGCTGATT CGCACCAAAC CAGAGGCAAT CGCGACGGTA
CATCGCCAGT TTCTGGAAGC GGGCGCAGAT GTCATCGAGA CTGACACCTT TGGGGCAACT
TCGATTGTTC TGGCGGAATA TGGACTGGAA GATCACGCCT ACGCCCTGAA TGTGGAAGCG
GCCAAGCTCG CTAAGGCGAT CGCGGCGGAA TTTTCGACGC CAGAGAAACC GCGCTTTGTG
GCTGGGTCGA TGGGGCCAAC GACCAAGCTG CCGACCTTGG GACATATCGG CTACGACGAG
ATGAAAGCCT CTTTTGCTGA GCAGGCGCGA GGTCTATGGG AAGGCGGCGT TGATCTCTTT
ATTGTTGAAA CCTGTCAAGA CGTGCTGCAA ATTAAAGCGG CACTGAACGG GATTGCAGAA
ATCTTTTCGG AAAAGGGCGA TCGCCGACCG TTGATGGTCT CGGTGACGAT GGAAACGACC
GGCACCATGC TGGTTGGCTC GGATGTAGCC GCAATGCTGG CGATTCTGGA ACCCTATCCG
ATCGATATCT TGGGGCTAAA CTGCGCCACC GGCCCCGATC GCATGGTGGA GCACATCAAA
TACCTGAGCG AACATTCGCC GTTCGTGATC AGCTGCATTC CCAACGCTGG CATTCCCGAG
AACGTGGGCG GCCATGCGCA CTATCGCCTC ACACCGATGG AGCTGCGGAT GGCGCTGCAT
CGCTTTGTCG AAGATTTAGG CGTGCAAGTG ATTGGCGGTT GCTGCGGTAC AAAACCAGAA
CACATCGCCC AATTGGCGGA AGTTGCAACG CAATTACAAG CGAAAGATCG TCCAGTTCGC
CGCGATCGTG ACCATCAACA ACGGCAACCG TTTAACTACG TTCCTTCGGC GGCTTCGATC
TACGGCACTA CGCCCTACAT TCAAGACAAC TCTTTCCTGA TCATTGGTGA GCGACTCAAC
GCTAGTGGTT CTAAAAAAGT ACGGGAACTG TTGAACGAAG AGGATTGGGA TGGACTGGTT
GCGATCGCCC GCAGCCAAGT CAAGGAAGGG GCGCACGTTC TTGACGTCAA CGTCGATTAC
GTCGGTCGCG ATGGCGAGCG CGATATGGGC GAGTTGGTAT CGCGGTTGGT TACCAACGTT
AATTTGCCGC TGATGCTCGA CTCGACCGAG TGGCAAAAAA TGGAGGCTGG CCTAAAGAAG
GCGGGCGGGA AATGCATTCT TAACTCTACT AACTATGAGG ATGGCGATGA GCGCTTCTTT
AAAGTGCTGG AACTTGCCAA ACAGTATGGG GCTGGGATTG TCGTCGGCAC GATTGATGAA
GAAGGGATGG CGCGAACGGC TGAGAAGAAG TTTGCGATCG CCCAGCGGGC TTATCGAGAT
GCTCTAGAGT TTGGTATTCC GGCGCATGAA ATCTTCTATG ATCCGCTCGC TTTACCAATC
TCGACAGGGA TTGAAGAAGA TCGCGGTAAT GGTCGCGAGA CGATCGAATC CATTCGTTTG
ATTCGGGAAA ATTTGCCCGG TGTGCATATC TTGCTGGGCG TTTCTAACAT CAGCTTTGGT
CTCAATCCAG CGGCACGAAT TGTCCTCAAT TCAGTTTTCC TTCACGATGC CTGCGAAGCA
GGAATGGATG GTGCGATCGT CAGCGCCGCG AAGATTCTGC CGCTCAGTAA GATTGATGAA
AAGCCATTAC AAGTCTGTCG TGATTTGATA GGCGATCGCC GGCGCTTTGA AAATGGTATT
TGCGTCTACG ATCCCCTGAC AGAGCTGACA ACCCTATTTG AAGGAGTCAG TGCCAAAGAA
GCTCGGGCCA GTGGGCCTTC GCTGGCTGAT TTGCCATTAG AAGAACGACT AAAACAACAC
ATCATCGACG GCGAACGGAT TGGCTTAGAT CAAGCATTAG CGACGGCACT TGAGCAGTAT
CCACCGCTAG AAATTATCAA TACCTTCTTG TTGGATGGCA TGAAGGTCGT TGGTGATCTC
TTTGGTAGTG GCCAAATGCA GTTACCCTTT GTGCTGCAAT CGGCTGAAAC CATGAAGTCT
GCTGTGGCTT ACCTTGAGCC CTTCATGGAT AAAGAGGAAA CCAATGACTC GGGCAAAGGC
ACGTTCCTAA TTGCAACAGT CAAAGGTGAT GTTCATGATA TTGGTAAAAA CTTAGTCGAT
ATTATTCTGA CGAACAATGG CTATAAGGTT GTCAATATTG GTATTAAGCA ACCGGTAGAA
AACATCATTC AAGCCTATCG AGACTGCAAC GCAGACTGTA TTGCCATGAG CGGGCTACTG
GTGAAGTCTA CTGCTTTTAT GAAGGAAAAC TTAGCTACCT TCAATGAGGA GGGTATTTCA
GTCCCAGTCA TTTTAGGAGG CGCGGCTCTA ACACCCAAAT TTGTCTATGA AGACTGCCAA
CAGACCTACA AAGGTCAAGT TATCTATGGC AAAGATGCTT TCGCTGATCT TCATTTCATG
GATCAGCTCA TGGCGGCTAA GTCCAAGGAT CAATGGGATG ACCAATTGGG CTTCTTGGAT
GAGCAGGGAC AGCCTTTGCA GGTCGCCGCG ATCGCCTCTG AAGCGGCTGA GCCAACAGAA
TCGAGAGAGT CTGTAGCAGA AGTTGTAATT GATTTAGAGC GATCGGAAGC CGTTGCAGTT
GATATCGATC GCCCCACACC ACCGTTCTGG GGATCAAAAA TCCTCGGTCC TGACGAAATT
CCCTTTGCCG AGGTCTTTAG CTATCTCGAT CGCCAAGCCC TGTTTGTAGG TCAATGGCAA
TTCCGAAAGC CGAAAGAGCA AAGTCGCGAA GAATACGATG CTTTTATTGC GGAAAAAGTA
GAACCGATTC TCCAGCAATG GACGACCCGA ATTCTGGCAG AAGATCTGCT AGAACCGCAG
GTCGTATATG GCTATTTCCC TTGCGTTGCA GTTGGAAATA GTCTGCAGTT GTTTGACCCC
AACGATCGCG ATCGCCCAAC CGCTCGTTTC GATTTCCCCC GTCAACGGAG TTTGCGGCGA
CTCTGTATTG CTGATTTCTT CGCACCAGAA GAGCTTGGCA TTCAGGATGT CTTCCCGATG
CAAGCAGTCA CGGTTGGCCA TAAGGCAACA GAATTTGCAG CCCAACTGTT TGCAGGCGAT
CAATATAGCG ACTATCTCTA TTTCCATGGT TTGGCAGTGC AGCTTGCCGA AGCGTTGGCC
GAGTGGACTC ACGCTCGCAT CCGGCGCGAA TTGGGCTATG GTTCACTAGA ACCCGAAAGT
TTGCGCGACA TCTTGGCGCA ACGTTATCAA GGCAGTCGCT ATAGCTTTGG TTATCCTGCT
TGCCCCAATG TTGCTGATTC GCGGATTCAG TTGGAGCTTC TAGAAGCCGA TCGCATTGGC
ATGAGTATGG ATGAGAGTGA ACAACTCTAT CCAGAACAAT CAACCACTGC AATCGTTGCC
TACCATCCGG CTGCGAAATA CTTTAGTGCT TGA
|
|---|
| Protein sequence | MQSLFLDRLH SPERPVLVFD GGMGTTLQFQ NLTAEDFGGP ETEGCNEWLI RTKPEAIATV
HRQFLEAGAD VIETDTFGAT SIVLAEYGLE DHAYALNVEA AKLAKAIAAE FSTPEKPRFV
AGSMGPTTKL PTLGHIGYDE MKASFAEQAR GLWEGGVDLF IVETCQDVLQ IKAALNGIAE
IFSEKGDRRP LMVSVTMETT GTMLVGSDVA AMLAILEPYP IDILGLNCAT GPDRMVEHIK
YLSEHSPFVI SCIPNAGIPE NVGGHAHYRL TPMELRMALH RFVEDLGVQV IGGCCGTKPE
HIAQLAEVAT QLQAKDRPVR RDRDHQQRQP FNYVPSAASI YGTTPYIQDN SFLIIGERLN
ASGSKKVREL LNEEDWDGLV AIARSQVKEG AHVLDVNVDY VGRDGERDMG ELVSRLVTNV
NLPLMLDSTE WQKMEAGLKK AGGKCILNST NYEDGDERFF KVLELAKQYG AGIVVGTIDE
EGMARTAEKK FAIAQRAYRD ALEFGIPAHE IFYDPLALPI STGIEEDRGN GRETIESIRL
IRENLPGVHI LLGVSNISFG LNPAARIVLN SVFLHDACEA GMDGAIVSAA KILPLSKIDE
KPLQVCRDLI GDRRRFENGI CVYDPLTELT TLFEGVSAKE ARASGPSLAD LPLEERLKQH
IIDGERIGLD QALATALEQY PPLEIINTFL LDGMKVVGDL FGSGQMQLPF VLQSAETMKS
AVAYLEPFMD KEETNDSGKG TFLIATVKGD VHDIGKNLVD IILTNNGYKV VNIGIKQPVE
NIIQAYRDCN ADCIAMSGLL VKSTAFMKEN LATFNEEGIS VPVILGGAAL TPKFVYEDCQ
QTYKGQVIYG KDAFADLHFM DQLMAAKSKD QWDDQLGFLD EQGQPLQVAA IASEAAEPTE
SRESVAEVVI DLERSEAVAV DIDRPTPPFW GSKILGPDEI PFAEVFSYLD RQALFVGQWQ
FRKPKEQSRE EYDAFIAEKV EPILQQWTTR ILAEDLLEPQ VVYGYFPCVA VGNSLQLFDP
NDRDRPTARF DFPRQRSLRR LCIADFFAPE ELGIQDVFPM QAVTVGHKAT EFAAQLFAGD
QYSDYLYFHG LAVQLAEALA EWTHARIRRE LGYGSLEPES LRDILAQRYQ GSRYSFGYPA
CPNVADSRIQ LELLEADRIG MSMDESEQLY PEQSTTAIVA YHPAAKYFSA
|
|---|
| |