| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1357 |
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| Symbol | |
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| ID | 3775550 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | - |
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| Start bp | 1391347 |
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| End bp | 1396770 |
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| Gene Length | 5424 bp |
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| Protein Length | 1807 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637799788 |
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| Product | multi-sensor signal transduction histidine kinase |
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| Protein accession | YP_400374 |
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| Protein GI | 81300166 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.869779 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAAGAA TCATGAGCAT ACGTTTTTTA ATTATCGAGG CGTATCTGCA TGTATTGGCC
TTTGCGTTAA TCATCACAGG CCTCATTGGG TTAATCGGCT ACCTTGATGT CCAACACTTA
ACCTTTCATA GTTTAGTTCT GCCATTAGAT AGTTCACTCT TATTACTATT ACTTGGTGGG
CTGCTACTTA GCGCAGTTTA TCGCGCAAGA AAGCTGCTAA AAGCCTTGAT GTTCTTGTTG
ATAATCACCG TAGTGTACAG CACCACAAGG AATTGGTTGG TTGGAGAGCC AGAAACAAAT
TTCTCGTTTA TCAGTGAATT TATTCGGGTT AGAACTGCTT TTGTTATCAC GTCCTTGATA
AGTAGTCTTG CTTTTTCTTG GAGTCTAGAA TCACGTCTAA CTAAGCGACG AGCATACTTT
ACTGGTGTTG GTATTATTTT GCTTTCAAGC ACATCATTGC TGTCTGACTT ATTTTGGGCT
CCAGAAGCTA CTAGCTTGAG ATATGATTTT TCGTCAATTT ATGTTGTCAA TTTCTTGAGT
ATTTTACTGA GCATTAGTGT TATTTTATTG GCGCCTAGAT CACATCAGAG TCTCAGCAGC
CCCGGAAGAA TTCCTGTTTT AGCAGGCTTA TTGGGAGTGA TGTTAACCTG CATCACTTGG
TATTTGCTCA GCTTGCAAAC TATTAGCTTT ATCAATCAGC AAAGTGACAT TTTACTGGCT
AAAGTCCAGA GCAGCACCGA GCGGGCATTA TCCAATCGAC TAGCACTCAT TCAACGAATG
AGCGAGCGCT GGGAAGCGCT AGGAAGCTTA CCCACTCAAG CCTATTGGCA GCAAGAAGCC
AAGAGTTACC TTCGTGACTT CCCGAATCTA CAGTGGGTGG GAGTATTCGA TTCTGAGATA
CAGCCCTACT GGCTGGTGGG ACGTACAGAT AAGGCTGCAG AGTGGTTGCC TCGGTTCAGA
GCTGAACAGA ATCAACAAGT TTGGTTCCAG CAAACCTTAG CCTCTAGGTC TACCTCACTC
AGCCCGGTAT TCACTCTTCC TGACAACCCA AGTACCTATG TCTTGCTTGC TAGCCCGCTG
AACTTACCGA ATCACCCCCC CCGCTTAATT GCTGCCGGCC TCAGTCTTCA GGGCATTATG
CGTGACCTTA TTGGGACAGA TTATGACCAG TTTGTTCTGG CTCTATTTCA AGGCGATCAA
CCAATCTACC GCTCAGCTCT CCTATCTAAT CAAGACTTGA AGAGTAGGCC TATTAACGAT
CGCAATATTA TTTTGAGCAA TGGGAAAAGT TGGAAATTAG TGGCCTATGT CAGTAACCCA
GCCGCATTTT CAACGGCACG TTTACTATCT GTCTTGGTGA TGGCATTTGG CTTGTTGCTG
AGCTTTTTTC TCATGCTTAG TCAACGATTA GCAAGAATTG CTACAGAACG TGCAAAATAT
CTACAACAAG CGAATAAAAA CTTGCAAGCC AGTCTGGAAA GCCAAGCCTT TGCTCAAGCC
CTCAACCAGC GCATCATGGA ATTCACTATG GATGTGCTTT GTTCCTTTGA TCGCGAGGGG
CGCTTTCTCG AAGTTAGTCC ATCGTGTCTT AAGTTATTTG GCTATAGTCC AGAAGAACTG
ATTGGCCGCC CCTATTTAGA ACTAGTCTTG CCTGAAGATC GGGATTTAAC AATTCAGGAA
GCCCAGCAGT TGATGACCGG TCGGCCAACC TATAACTTTC GCAATCGCTA TCGTCATAAA
GATGGTCATG TTATACACAT TCTTTGGTCT GCTGACTGGT CTGAAACTGA TCAAGTGTTA
TTTGCAGTTG CTCATGATAT TACGCCACTT GTTCAGAACG AAGCCTTTGC TAATCGTCAA
CGCGATATTT TGAGCTTGAT TTCCCTTGAT CGCCCCCTGA CAGAAATATT GACGGCCATT
TGCGCAATGG TAGAGGAGTT CAATCCGAGC ACTTACTGCT CAATTTTGCG CCTCGATCGG
GAGACTCAAC AGATTTGGAC AGTCGTAGCT CCCAGCCTGC CCAAAGAGTA TTGCCAAGCG
ATTGATGGCG CCACAGTGGG GCCAAACACG GGAAGTTGCG GGGCAGCTAT TTTCCGGCGG
CAACCTGTTC TCGTTGCGGA CATCGAATCG GATCCGCTTT GGGCAAACGA CCGCGATACT
GCTCTCATCC ATGGCTTGCG GTCTTGCTGG TCGTTTCCCT TGATTGCTCA TAATGGGCAA
GTTCAAGGGA CATTAGCAGT CTATCAACCA TTTCCACAGA CACCCTCGGA AGATCAACTG
CAGCAGTGTC TCACCGTGGC ACAGTTAGCA GCGATCGCGT TCGCCCGATC ACTCGACCGC
CAACAACTTC AAGATAGTGA GCAGCGTTTT CGATCCCTGT TTACCTTCAA CCCTGATGCC
GTCTACTCAT TTGACTTGCA GGGTATCTAC CAGAGCATGA ATTCTGCTGG CTTCGAAATT
TTGGATCGAC AAGCTGATCA AATCATCGGT AAGCATTTTT CAGATGTTGT TATCTCAGAA
GACCTTGAAA AATGTCAACA GCATTTTGAC CAAGCTTGCA AAGGAGAGGC GCAGCACTAT
GAAATAAGGA TTAACGGCAG AAACGGTCAA CTCTTTTACT TAGATGTTAG TAAATTTCCG
ATTGTTGTAA ACAACAAGAT TGTTGGAGTT TTTGGTATTG CCAAAGATAT TACTCAGAGA
AAGCAAATTA CTGCTGATTT ACAACAGGCT TTGATGCAGA GTAATAAGCA GACAGAGCAG
CTTCGTCGTT TAGGAAATGC TGCGATCGCT ACTGCAGAGC TCCAAGACCA TCAAGAATTG
GTCAAATATC TTGTGGAACA AGTTCGGCTT ACCATTAGGG CTCACCAAGC CGTTATTAGT
TTAACTCGAT GTGATGACTG GAGTCAGTCA ATCAATGCTA TCTCTCTCTC TGATAAATAT
GCTGCTTGGA AGAACTATGA TGAACTATCC ACTGGCGAAG GTATTTACAC CCTCATTTGC
GAAACGAATC AGCCCTTGGT TCTAACTCAA GAAGAGCTTG AAAAACACCC TCGCTGGCGA
GGATTTGGCG ACCAAGCAGA TAAGCATCCT CCCATGCGAG GCTGGTTGGC TGTACCTCTG
TTCGATCCCA ATGGCCGCAA TCTCGGTGTC CTTCAGCTCT CTGATAAAGA GGAAGGCGAA
TTTGATGATG ATGATCTAGC GATCGCCCAG CAATTTGCAC AGATGACAGT GGCGGTTTTG
GAAAATAACC GGCTCCTCAA TGAGGTGCTC ACTGCTGAAC AACAACTGAA GGAGCAGTTG
AGCTTCAACT CTACAATCAC GGACTGTATG GCTGAGGGAC TGTTGGCCGT TGATGAACGT
GGCAAATTAG CTTTTGCCAA TCCAACGGCG CAGGAGTGGC TGGCAATCGA CAAGTCAGAA
CTTTCGCAAC AATCCCTCGA CCAACTCCTA CCACTAGATC TGACTGCTTG GAATCAAGGA
GGAGTTGGCA ATCAAGGGGA GTTGAAGCTT AAAGGACGGA TTTTGCAGTA CGAAGCCCGT
CCCTTAGTAG GCCCCGTAGC AGAGAGAGGT TGGGTTTTAG TCCTCCACGA CGTTACAGCC
CAGCGTCAAG TTGACCAAGC CATGCGGGAG CGAGACCAGT TTTTTAGCCT TTCCCTCGAG
ATGTTCTGCA TGGTCGATTT ACGAGGGCGT TTCATTCAGG TCAATCCAGC CTTTGCTGCA
ACCCTTCGCT ACAGTACCGC TGAGCTCGTT GGTCGCCCCT ATCTCGAGTT GGTCGATTTG
GGCGATCGCA GTCAGATCGC GACTACAATT CGCCGGTTGA AAGCCGGGCT TCTCATCCAC
GATCTAGTCA TCCGCGTCTG GGACAAAGCA GGTGAGTTAC ACTGGCTACA AATCAGTGCA
GCCCTCGGGG ACGATCGCGT CATCTATTGC GTAGCCCGCG ACGTTACAGA GCAACGAGCT
ATTCAAGAGC AAATCCTTCA GCAAAACCTA CTGCTAAGAA TGGCTGGGCA GACTGCCAAG
CTGGGCGGCT GGAGCGTTGA GCTACCCAGT CGAGAAGTGA TTTGGTCGCC AGAAACCTTT
AGTTTGCTGG GTTTTACTGA TGAAGATGAA CCCGATTTGG AGGAAGCCCT TAGCCTCTAT
CCCCCTGCGG AGCGAGCCCT AGTCACAAAG GCGCTAGAGG ACTGTATTCA GCAGGGAATT
AGCTTTGATT TTGATGTAGC TGTTCACAAT ACTTCTGGCT TCCTGCTCGA TGCACGAGTG
ACGGGGCAAG CCGTTCGTGA TGAAACTGGA GCGATTGTAA GAATCTCGGG GGCATTTCAG
GATGTTAGCG ATCGCAAACG GGCCCAACGT GAGGCTCAGC GACTGGCGGA TCGGCTACGA
ACCACGCTTG AAAGCATTAC TGATGGCTTT TATACCCTCG ATGAAAACTG GCGATTTAGC
TACCTCAATC AGGAGGGTGC TCAGCAGCTG GGCGTCAATG TAGAAGAAAC GCTAGGCCAA
ATGGTCTGGA CTGCTTTTCC TGGGTCCTAC GAGAGCGAAC TCGGCCATAT TTATCGGCAA
GCGATTGCTA CGGGCGAAGC CGCTCATTTT GAGACCTACT ATGAACCCTT CGGCCGGTGG
TTTGAAGTCC ATGCTTACCC TTCTGAAGAC GGTTTGGCAG TCTACTTCCG CGATGTTTCA
GAACGTCGGC AAACCGAACA AAATTTACGG ATTACGCTGC GAGAGCTAGA GCGCAGCAAC
CAGGAGCTGC AGGAATTTGC CTTTGTTGCC TCCCACGACC TTCAGGAGCC ACTGCGCAAA
ATTCAGGCTT TCTCGGATCG CCTCATTGCT CGGACCAGCA ACCTAGATGA TGAATCTCAG
GATTATCTGA GGCGTATGGC CTCTGCAGCA GGACGAATGC AGACCTTGAT CATCGATTTG
TTGAACTACT CCCGTGTCAA CACTCGGGGT CTGCCCTTAC AGCCCTTATC CCTCGACCAA
GTACTCGACG ATGTCTTGGT CGATATGGAA GCTAGTCTCG ATCAGGCCTC TGCGATCGTG
GAGCGGCAGC CCTTGCCAAC TATCCAGGGT GACGCCGGTC AGTTTCGCCA GGTTTTCCAG
AATCTGTTGA GTAATGCCCT GAAATTTCAG TCAGCAGACA ACCAACCATT AATTCAGATT
TACAGTGAGC TGACAGAGGC TGGGCAATTG AGGTTGTGCA TCGCTGATAA TGGCATTGGA
TTCGATGAGA AGTATCTAGA CCGAATTTTC AACCCCTTCC AGCGCTTACA TAGTCGCGAT
GCCTATGCTG GTACAGGGAT TGGACTAGCG ATCGTCAAAA AAATCATTGA GCGCCACGGC
GCGACGATTA CTGCAAAGAG TATCCCCGGA CAAGGTAGTG TATTTTTCAT TACTTTTCCT
GTAACTGAAA AAGATTTCCG ATGA
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| Protein sequence | MSRIMSIRFL IIEAYLHVLA FALIITGLIG LIGYLDVQHL TFHSLVLPLD SSLLLLLLGG
LLLSAVYRAR KLLKALMFLL IITVVYSTTR NWLVGEPETN FSFISEFIRV RTAFVITSLI
SSLAFSWSLE SRLTKRRAYF TGVGIILLSS TSLLSDLFWA PEATSLRYDF SSIYVVNFLS
ILLSISVILL APRSHQSLSS PGRIPVLAGL LGVMLTCITW YLLSLQTISF INQQSDILLA
KVQSSTERAL SNRLALIQRM SERWEALGSL PTQAYWQQEA KSYLRDFPNL QWVGVFDSEI
QPYWLVGRTD KAAEWLPRFR AEQNQQVWFQ QTLASRSTSL SPVFTLPDNP STYVLLASPL
NLPNHPPRLI AAGLSLQGIM RDLIGTDYDQ FVLALFQGDQ PIYRSALLSN QDLKSRPIND
RNIILSNGKS WKLVAYVSNP AAFSTARLLS VLVMAFGLLL SFFLMLSQRL ARIATERAKY
LQQANKNLQA SLESQAFAQA LNQRIMEFTM DVLCSFDREG RFLEVSPSCL KLFGYSPEEL
IGRPYLELVL PEDRDLTIQE AQQLMTGRPT YNFRNRYRHK DGHVIHILWS ADWSETDQVL
FAVAHDITPL VQNEAFANRQ RDILSLISLD RPLTEILTAI CAMVEEFNPS TYCSILRLDR
ETQQIWTVVA PSLPKEYCQA IDGATVGPNT GSCGAAIFRR QPVLVADIES DPLWANDRDT
ALIHGLRSCW SFPLIAHNGQ VQGTLAVYQP FPQTPSEDQL QQCLTVAQLA AIAFARSLDR
QQLQDSEQRF RSLFTFNPDA VYSFDLQGIY QSMNSAGFEI LDRQADQIIG KHFSDVVISE
DLEKCQQHFD QACKGEAQHY EIRINGRNGQ LFYLDVSKFP IVVNNKIVGV FGIAKDITQR
KQITADLQQA LMQSNKQTEQ LRRLGNAAIA TAELQDHQEL VKYLVEQVRL TIRAHQAVIS
LTRCDDWSQS INAISLSDKY AAWKNYDELS TGEGIYTLIC ETNQPLVLTQ EELEKHPRWR
GFGDQADKHP PMRGWLAVPL FDPNGRNLGV LQLSDKEEGE FDDDDLAIAQ QFAQMTVAVL
ENNRLLNEVL TAEQQLKEQL SFNSTITDCM AEGLLAVDER GKLAFANPTA QEWLAIDKSE
LSQQSLDQLL PLDLTAWNQG GVGNQGELKL KGRILQYEAR PLVGPVAERG WVLVLHDVTA
QRQVDQAMRE RDQFFSLSLE MFCMVDLRGR FIQVNPAFAA TLRYSTAELV GRPYLELVDL
GDRSQIATTI RRLKAGLLIH DLVIRVWDKA GELHWLQISA ALGDDRVIYC VARDVTEQRA
IQEQILQQNL LLRMAGQTAK LGGWSVELPS REVIWSPETF SLLGFTDEDE PDLEEALSLY
PPAERALVTK ALEDCIQQGI SFDFDVAVHN TSGFLLDARV TGQAVRDETG AIVRISGAFQ
DVSDRKRAQR EAQRLADRLR TTLESITDGF YTLDENWRFS YLNQEGAQQL GVNVEETLGQ
MVWTAFPGSY ESELGHIYRQ AIATGEAAHF ETYYEPFGRW FEVHAYPSED GLAVYFRDVS
ERRQTEQNLR ITLRELERSN QELQEFAFVA SHDLQEPLRK IQAFSDRLIA RTSNLDDESQ
DYLRRMASAA GRMQTLIIDL LNYSRVNTRG LPLQPLSLDQ VLDDVLVDME ASLDQASAIV
ERQPLPTIQG DAGQFRQVFQ NLLSNALKFQ SADNQPLIQI YSELTEAGQL RLCIADNGIG
FDEKYLDRIF NPFQRLHSRD AYAGTGIGLA IVKKIIERHG ATITAKSIPG QGSVFFITFP
VTEKDFR
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