Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Synpcc7942_1355 |
Symbol | |
ID | 3775548 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus elongatus PCC 7942 |
Kingdom | Bacteria |
Replicon accession | NC_007604 |
Strand | - |
Start bp | 1388109 |
End bp | 1390898 |
Gene Length | 2790 bp |
Protein Length | 929 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637799786 |
Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_400372 |
Protein GI | 81300164 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.968718 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCTATA GCGAAGTTCA CTGGCGGTTG CTCTTGGTCG ATGATGATGA GGATGATTTC ATCATCACCC GTGACTTACT GCGCGATGCT CAACAGGCAC AGATCCAGTT GGACTGGTGC TCCGACTTCC AAGAAGCATT GGCAACAATG GGCCGCCAAG AGCATGACGT ATATTTGGTG GACTATCGAC TGGGTGCTGA ATCAGGATTA GACCTGATTG ACCAAGCAAT TCAGGCTGGG ATTACCCGAC CTATTATTTT GCTGACGGGG CAGGGGAATG AACAGCTTGA TGCCTCTGCA ATTGAACTTG GGGCTGCCGA TTATCTGGTC AAAGGACAGC TAGATTGTCA GCAATTGCTG CGCAGCATTC GCTATGCCAT CGATCGCAAT TTAGCAACGA CTCGTCTGGC GGAAAGTGAA TCCCGTTATC GGTTGCTATT TGAAGCTAAT CCAGAACCGA TGTGGGTTTT TGCCAAACAA GGGTTGCAGT TTTTGGCGGT TAATCAAGCA GCTTCTCAAT TTTTTGGCTA CAGCCAGCAA GAATTTCTTG CCATGACGGT TTTAGATATC CAGAGTGAGG AGGAAAAAAC ACGTTTTTTG CAGTTTTTTG AATCGTTAAT CTGCAATCAA ATTGTTGATC CTGCTGTGGG AGTTTGGGCT TATCGACATA AACAGGGGCA TCTAGTATTT GCTGATGTTC TCATCCATGA CTTTGAGTTT GACAACCAAC CCTGCTGCCT TATTTTAGCA ATTGATATCA CCGAAAAACA AGCTGCACGG GAGTTAGCCC ATCAGCGCGA ACAGGCTTTT CGGAAGCTAC TGAATGACAA TCGGGATCCA CTACTAGTGA TTTCAGGCGA TCGCAGGATT TGCTATGCCA ATCCTGCAGC CCAAAAATTA CTAAAGTTGA ATTTAGAACA ATTAGAATCT CAATCTTTAG ATCTACCGCT ACTGAGTGAC AAGCTTACTG AGTGGGCCTT GACGTTGCCT GATGGCAGCG TAGCAGAGGT AGAGATTCAT CGTTCAGAAA CTGATTGGGA AGGACAGCCT GCAGACCTGC TCTCACTTCG AGATATTGCT GAGCGTAAGG CATCAGAACA GCAGCTTCGT TTGCTCAAAG AAAGTCTCGA AGCGAGCTTC AACGGTGTTG TTATTGTAGA TGCAATCGAA CCTGACATGC CTGTGATCTA TGTCAATCCA GCCTTTGAGC GAATCACGGG TTATTCTGAA GCTGAAATGC TAGGCAGAAA CTGCAGAATA TTACAAGGCA ATGAGCGTGA CTCTCTCCAA ATTGAAGAAA TTCATCGCGG TCTCAGTCAG GCTGAAAATG TTCATGTAGT CATCCGTAAT TTTCGAAAAG ACGGCCAACC ATTCTGGAAT GATCTCTATA TTTCGCCTAT TTTTAATGCA CAAGGTAATG TCACTCATTT CATTGGAGTA CAAAACGATA TTACAGAGCA AAAACGCTAC GAGGAAGAAC TAAGCTTCAG TGCTAGCCAC GACGTTCTCA CAGGTTTACC AAATCGTGCT GTGCTCGAAG ACCGCTTACG GCAGGGTTGC AAGATGGCCC TTCGCCAAAA GCATAGCCTT GCCATCCTCT TCATTGACTT AGATGGATTC AAATTAATCA ATGACTCTAT TGGCCATCGC TCAGGTGACT TGCTACTTGT TGAAGTCGCT CAGCGCATGT GTGAACAAGT GCGGGCGGGT GACACAGTTG CACGTATCGG AGGAGACGAA TTTATCATTC TTTTAGTTGA TTTAAAACTT GAAAATGATG TTATTTCAAT TGCCGATCGC CTACTTGCTA GTGTTGCTCG TCCCTATCAT ATTCAAGGAA TTTATCTGCA TGTAACGGCC AGTATGGGGA TCACCCTGAG TGACGGTGAT ATTGAACAAC CCACTCAGTT GATCCAACAA GCTGATCTGG CAATGTACAA GGCTAAGCAA GAAGGTCGCA ATAATTATCA GTGGTATACC AACGACCTAA ACCTACGGCT ACGCGAACGA GTTCATCTAC GCAATGAGCT GCAAAAGGCA ATTGAGACAG AAGCCTTTGA GTTGTACTTT CAGCCCAAAA TAGAGGGTTG TAGTGGGCAA GTGATCGGTC TGGAAGCCTT GTTGCGTTGG CAACATCCCC AAATGGGATT TATTTCTCCT GCCACATTTG TACCGATCGC CGAGGATACT GGGCAAATAA TTCCCCTGAG CCAATGGGTT TTGGAGACTG CTTGTCGACA GCTCCGAGAC TTATTACAGC AAGGAATAGC AGCCCCATCC GTAGCAGTTA ATATCTCAAC CGTTCAATTT CGACGCATTA ACTTCGTTAA GAGTGTTCAA TCTGCTTTGC AAAAGTATCA GCTTAAGTCA GAACATTTAG AGATAGAGAT TACTGAGAAT GTTTTGTTTG ACAACACCGA GAAAGCGATC GAGAAATTGC AGCGACTCAA AGAATTAGGA GTAAATATTT CGATCGATGA CTTTGGAACT GGATTTTCAA GTCTGAGCTA CCTTAAAGAA CTACCCATTG ATACTGTCAA AATCGACCGC TCATTCGTCC AAGAGATCAA CACTGACTCT CGTGATGCAG CTATCACCCA AGGAATCATT TCGATGGCTC ACCACCTGCG ACTCAATGTT GTTGCGGAAG GGGTTGAGAC TGAGCAACAG TTCAAGTTTC TCCAGCAGAG CAACTGTGAC CAATACCAGG GCTATTATTT TGCCAAACCG ATGCCCTTCG AAGCATTGAA GCAATATTTA ATGGATGAAG CTGCGCGCGA ACTTCCATAA
|
Protein sequence | MTYSEVHWRL LLVDDDEDDF IITRDLLRDA QQAQIQLDWC SDFQEALATM GRQEHDVYLV DYRLGAESGL DLIDQAIQAG ITRPIILLTG QGNEQLDASA IELGAADYLV KGQLDCQQLL RSIRYAIDRN LATTRLAESE SRYRLLFEAN PEPMWVFAKQ GLQFLAVNQA ASQFFGYSQQ EFLAMTVLDI QSEEEKTRFL QFFESLICNQ IVDPAVGVWA YRHKQGHLVF ADVLIHDFEF DNQPCCLILA IDITEKQAAR ELAHQREQAF RKLLNDNRDP LLVISGDRRI CYANPAAQKL LKLNLEQLES QSLDLPLLSD KLTEWALTLP DGSVAEVEIH RSETDWEGQP ADLLSLRDIA ERKASEQQLR LLKESLEASF NGVVIVDAIE PDMPVIYVNP AFERITGYSE AEMLGRNCRI LQGNERDSLQ IEEIHRGLSQ AENVHVVIRN FRKDGQPFWN DLYISPIFNA QGNVTHFIGV QNDITEQKRY EEELSFSASH DVLTGLPNRA VLEDRLRQGC KMALRQKHSL AILFIDLDGF KLINDSIGHR SGDLLLVEVA QRMCEQVRAG DTVARIGGDE FIILLVDLKL ENDVISIADR LLASVARPYH IQGIYLHVTA SMGITLSDGD IEQPTQLIQQ ADLAMYKAKQ EGRNNYQWYT NDLNLRLRER VHLRNELQKA IETEAFELYF QPKIEGCSGQ VIGLEALLRW QHPQMGFISP ATFVPIAEDT GQIIPLSQWV LETACRQLRD LLQQGIAAPS VAVNISTVQF RRINFVKSVQ SALQKYQLKS EHLEIEITEN VLFDNTEKAI EKLQRLKELG VNISIDDFGT GFSSLSYLKE LPIDTVKIDR SFVQEINTDS RDAAITQGII SMAHHLRLNV VAEGVETEQQ FKFLQQSNCD QYQGYYFAKP MPFEALKQYL MDEAARELP
|
| |