| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1337 |
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| Symbol | |
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| ID | 3775530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | + |
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| Start bp | 1368411 |
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| End bp | 1372715 |
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| Gene Length | 4305 bp |
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| Protein Length | 1434 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637799768 |
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| Product | Integrins alpha chain |
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| Protein accession | YP_400354 |
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| Protein GI | 81300146 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03661] type 1 secretion C-terminal target domain (VC_A0849 subclass) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.153084 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.903463 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAGG CTTCTCTAAA TCTCTCCACT CTCAATGGCA GCAATGGCTT CCGCATCAAT
GGCATTGCGG CGTATGACTA CTCTGGCCGT TCTGTCAGTG GTGCTGGGGA TGTGAATGGC
GATGGTATTG ATGACCTCAT CATTGGAGCT AACTATGCCG ACCCCAATGG CGGCTATTCA
GGTCAGAGCT ATGTGGTCTT TGGCTCAGAT CAGGGCTTCA GTGCTGATCT GAACCTTGCG
GATTTGGATG GCAGCAATGG CTTCCGCATC AATGGCATTG CGGCAGATGA CCGCTCTGGC
ATTTCTGTGA GTAATGCGGG GGATGTGAAT GGGGATGGCA TTGCTGACCT GATTGTTGGG
GCTAATTATG CCGACCCTAA TGGAAATCTG TCTGGTCAGA GCTATGTAGT CTTTGGTTCA
GATCAGGGCT TTAGTGCTGC CCTGAATCTC TCCACTCTCA ATGGCAGCAA TGGCTTCCGC
ATCAATGGCA TTGCGGCGTA TGACCAATCT GGCTTTTCAG TCAGTAGTGC CGGGGATGTG
AATGGGGATG GGATTGATGA CCTGATCATT GGGGCTTATT TTGCTGACCC TAATGGAAAT
CTGTCTGGTC AGAGCTATGT GGTCTTTGGC TCAGATCAGG GCTTTAGTGC TGCCCTGAAT
CTTGCAGATT TGAATGGCAG CAATGGCTTT GCCAGCAATG GCATTACTGC GAGTGACTAC
TCCGGCCGTT CTGTCAGTGG TGCTGGGGAT GTGAACGGGG ATGGCTTTGA TGACTTCATC
ATTGGGGCAA GTGGTGCCGA CCCCAATGGC AGTGCTTCTG GCCAGAGCTA TGTGGTCTTT
GGCTCAGATC AGGGCTTTAG TGCTGCCCTG AATCTTGCAG ATTTGAATGG CAGCAATGGC
TTTGCCATCA ATGGCATTAC AGCTTATGAC CGTTCCGGCT TTTCTGTCAG TGGTGCTGGG
GATGTGAATG GGGACGGCAT TGATGACCTG ATCATTGGGG CTTTTGGTGC TGACCCAAAT
GGCACTAATA GTGCCGGTCA GAGCTATGTG GTCTTTGGCT CAGATCAGGG CTTCAGTGCT
GATCTGAATC TTGCGGATTT GGATGGCAGC AATGGCTTTG CCATCAATGG CATTGCGGCG
TTTGACCTCT CCGGCTTTTC TGTCAATGGT GCTGGGGATG TGAACGGGGA TGGGATTGAT
GACCTGATCA TTGGAGCACG AAATGCCGAC CCCAATGGCG GGGCTTCTGG TCAGAGCTAT
GTGGTCTTTG GCAAGAAGGG GGGCTTTAGT GCTGACCTAA ATCTCTCCGC GCTGAATGGC
AATAATGGCT TCCGCATTAA TGGCATTGCG GCAGGGGACA ACTCCGGTAC CTCCGTCAGC
AATGCCGGGG ATGTGAATGG GGATGGGGTT GATGACCTCC TCATTGGAGC TAACTATGCC
GACCCCAATG GCAATACCAA TGCCGGCCAG AGCTATGTGG TCTTTGGCAA CGCTGCTCCG
GTGCTTGATT TGGATGGCGC TGCATCAGCA GAACTAAACT TTGGCGCTGT CTTCACCGGT
ACATCAGTCT CAGTCGTGGG TTCAGGGCTC ACCATCACTG ATCTAAACTC CCCGACACTC
TCCGCAGCGA CCGTAACCTT GGTCAACCGA CCGGATGGCA TTGCTGAAAG CTTGAGTGCC
ACAACCACAG GTACTTCAAT TACAGCGACT TATGACAGCA ATACCGGGGT GCTGTTGCTC
TCAGGTCTAG CCTCAGTAGA GGACTATCAG CAAGTCCTGC GTAGCGTCAC CTATACCAAC
ACCTCGAATG CGGCTGATCT GGATGTGAGC CATCGCACGA TTGAGTTTGT CCTCGACGAT
GGAGCAGACT TTGCCAACAC TAGTGCAGTA GTCACCACCA GCGTGACGGT TCTAAGGCTC
CCCTTGGCGG ATAAGGCAAG CGTCAGTCTC TCCAGTCTGG ATGGCGGTAA TGGCTTCCGC
ATCACTGGCA TTGCAGCGAA TGACTTCTCC GGCAGTTCGG TCAGTAATGC TGGGGATGTG
AATGGGGACG GGATTGATGA CCTGATCATT GGGGCACGCG ATGCCGACCC AAATGGCACT
AATAGTGCTG GTCAGAGCTA TGTGGTCTTT GGCTCAGATC AGGGCTTTAG TGCTGACCTA
AATCTCTCGA GTCTGGATGG GAGTAATGGC TTTGCCATCA ATGGTATTGC TGCGTATGAC
TACTCTGGGC GTTCAGTGAG CGGTGCCGGG GATGTGAACG GTGATGGCGT TGATGACCTG
ATCATTGGAG CTTTTGGTGC CGACCCCAAT GGGAATCTTT CTGGTCAGAG CTATGTCGTC
TTTGGTTCAG ATCAGGGCTT TAGTGCTGAC CTAAATCTCT CGAGTCTGGA TGGGAGTAAT
GGCTTTGCCA TCAATGGCAT TGCTGCGGAT GACTTCTCCG GCTTTTCGGT GAGTAGTGCT
GGAGATGTGA ACGGGGATGG GATTGATGAC CTGATCATTG GAGCGTCTCT TGCCGACCCA
AATGGAGCTC GTTCTGGCCA GAGCTATGTT GTCTTTGGTT CAGATCAGGG CTTTAGTGCT
GACCTAAATC TTGCGGATTT GAATGGCACA AATGGCTTCC GCATTAATGG CATTGCTGTA
AATGATCAAT CCGGCTTTTC GGTGAGTGGT GCTGGGGATG TGAATGGTGA TGGGATTGAT
GACCTGATCA TTGGAGCGTT TCTTGCCGAC CCCAATGGCA ATTATTCTGG TCAGAGCTAT
GTAGTCTTCG GCAAGACAGA TGACTTTGAT ACTGAGCTCA ATCTCGCTGA TTTAGATGGC
AGCAATGGCT TCCGCATTAA TGGCATTGCT GTAAATGATC AATCCGGCTT TTCGGTGAGT
GGTGCTGGGG ATGTGAACGG TGATGGAATT AATGACCTAA TTATTGGGGC TCTTGGTGCC
TCTCCCCATA GCAATACTAA CGCTACTAAC GCTGGCCAGA CTTATGTGGT CTTTGGCTCA
GATCAGGGCT TCAGTGCTGA CCTGAATCTT TCCGCGCTCA ATGGTCGCAA TGGTTTTGCC
ATCAATGGCA TTACTGCAGG CGACGAATCT GGCCGTTCAG TGAGTGGTGC AGGGGATGTG
AACGGTGATG GGATTGATGA CCTGATCATT GGGGCATCTA ATGCAGACCC AAATGGCAAC
TTTTCTGGTC AGAGCTATGT AGTCTTTGGC AAGAAGGGGG GCTTTGCAGC TGAGCTGAAT
CTCTCTGACT TGAATGGCGT CAATGGTTTT GCCATCAATG GCATTACTGC AGGCGACGGT
TTCGGCTCTT CGGTGAGTGG TGCGGGGGAT GTGAATGGCG ATGGTATCGA TGATCTGCTC
ATTGGTGCTC CAACTGCCGA CCCCAATGGT AGTCAATCTG GTCAGAGCTA TGTGGTGTTT
GGCAACGCAG CACCGGTGCT TGATTTGGAT GGCACCACAT CACCAGAGCT GAACTTTGGC
GCTGTCTTTA CTGGTACGCC AGTCTCAGTT GTGGGTTCAG GACTCACCAT TACCGATCTC
AACTCTCCAA CCCTCGCCGC AGCGACCGTG ACCTTGGTCA ACCGGCCCGA TGGCATTGCT
GAAAGTTTGA GTGCAATCAC GGATGGCACT GCAATTAAGG CCAGCTATGA CAGCAATACC
GGGGTGCTGC TGCTCGTGGG TCTGGCTACT GTGGCGGATT ATGAGAAAGT CCTGCGCACC
GTCACCTATA CCAACACCTC TAATGCAGCC GATCTGGATG TAAGCCGTCG CACGATTGAG
TTTGTCCTCG ACGATGGAGC AGATTTTGCC AACACCAGTG CGGTAGTCAC TACCACGCTG
AGCTTCAAGA ATGAAGTCAA TACAATCACT GGAACCCCCA GACTCGACTT CCTCCGAGGC
AGCAAGGGAG ATGACTTGAT TACGGGGCTC GGGGGGAATG ACTTCCTGTT TGGCAGGGCT
GGTAATGACA CCTTGATTGG CGGACTCGGC TCTGACGTCC TTTCTGGTGG AGCCGGCAAG
GACCGCTTTG TCTACACCGC TGTTACTGAG GCTCGCGACT TAATCATCGA CTTTAATGCC
AAGCAGGATG TTCTGGATCT AAGCGGGTTG TTGGATAGTC TGGGCTATCA AGGCTCTAAT
CCTGTTGCGG ATCAGGTCCT GCGCTTGAAC AGTCAGTCTT TCTTGGGCAC GACGGTCTCT
GTCAATGTAG CGGGACTCGG TGGAGTGCCC GACTTTGTCT CCCTAGTGAC CCTGCTTGGT
GTCTCTTCTT CTGCCCTCGT CATTGGTGAA AACATCATCA TTTAG
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| Protein sequence | MAKASLNLST LNGSNGFRIN GIAAYDYSGR SVSGAGDVNG DGIDDLIIGA NYADPNGGYS
GQSYVVFGSD QGFSADLNLA DLDGSNGFRI NGIAADDRSG ISVSNAGDVN GDGIADLIVG
ANYADPNGNL SGQSYVVFGS DQGFSAALNL STLNGSNGFR INGIAAYDQS GFSVSSAGDV
NGDGIDDLII GAYFADPNGN LSGQSYVVFG SDQGFSAALN LADLNGSNGF ASNGITASDY
SGRSVSGAGD VNGDGFDDFI IGASGADPNG SASGQSYVVF GSDQGFSAAL NLADLNGSNG
FAINGITAYD RSGFSVSGAG DVNGDGIDDL IIGAFGADPN GTNSAGQSYV VFGSDQGFSA
DLNLADLDGS NGFAINGIAA FDLSGFSVNG AGDVNGDGID DLIIGARNAD PNGGASGQSY
VVFGKKGGFS ADLNLSALNG NNGFRINGIA AGDNSGTSVS NAGDVNGDGV DDLLIGANYA
DPNGNTNAGQ SYVVFGNAAP VLDLDGAASA ELNFGAVFTG TSVSVVGSGL TITDLNSPTL
SAATVTLVNR PDGIAESLSA TTTGTSITAT YDSNTGVLLL SGLASVEDYQ QVLRSVTYTN
TSNAADLDVS HRTIEFVLDD GADFANTSAV VTTSVTVLRL PLADKASVSL SSLDGGNGFR
ITGIAANDFS GSSVSNAGDV NGDGIDDLII GARDADPNGT NSAGQSYVVF GSDQGFSADL
NLSSLDGSNG FAINGIAAYD YSGRSVSGAG DVNGDGVDDL IIGAFGADPN GNLSGQSYVV
FGSDQGFSAD LNLSSLDGSN GFAINGIAAD DFSGFSVSSA GDVNGDGIDD LIIGASLADP
NGARSGQSYV VFGSDQGFSA DLNLADLNGT NGFRINGIAV NDQSGFSVSG AGDVNGDGID
DLIIGAFLAD PNGNYSGQSY VVFGKTDDFD TELNLADLDG SNGFRINGIA VNDQSGFSVS
GAGDVNGDGI NDLIIGALGA SPHSNTNATN AGQTYVVFGS DQGFSADLNL SALNGRNGFA
INGITAGDES GRSVSGAGDV NGDGIDDLII GASNADPNGN FSGQSYVVFG KKGGFAAELN
LSDLNGVNGF AINGITAGDG FGSSVSGAGD VNGDGIDDLL IGAPTADPNG SQSGQSYVVF
GNAAPVLDLD GTTSPELNFG AVFTGTPVSV VGSGLTITDL NSPTLAAATV TLVNRPDGIA
ESLSAITDGT AIKASYDSNT GVLLLVGLAT VADYEKVLRT VTYTNTSNAA DLDVSRRTIE
FVLDDGADFA NTSAVVTTTL SFKNEVNTIT GTPRLDFLRG SKGDDLITGL GGNDFLFGRA
GNDTLIGGLG SDVLSGGAGK DRFVYTAVTE ARDLIIDFNA KQDVLDLSGL LDSLGYQGSN
PVADQVLRLN SQSFLGTTVS VNVAGLGGVP DFVSLVTLLG VSSSALVIGE NIII
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