| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1326 |
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| Symbol | |
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| ID | 3775519 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | + |
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| Start bp | 1357232 |
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| End bp | 1360693 |
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| Gene Length | 3462 bp |
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| Protein Length | 1153 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637799757 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_400343 |
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| Protein GI | 81300135 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTTTT CAGCACTGAT TCGCACCTTG GCGCGATCGC CCCTCAGCCA AGACCTGCTG
ACGAAGTTAG AGAAGCAATC GGGCCTGCGG CTGATTGGAG CCGGTCGCTT AGCGCAGGGG
TTGGTGACCT CAGCCCTTGT CCAAGCCCAG TCGCGATCGC TACTGGTGAT TTGCGCCACC
CTCGAAGAAG CCGGTCGCTG GGCTGCGCAG CTGGAAGGCA TGGGCTGGCC GACGCTGCAT
TTTTACCCGA CCTCAGAATC CTCGCCCTAC GAAGCCTTTG ATCCCGAATC AGAGCTGGTT
TGGGGGCAGT TGCAAGTCCT TGCCGATCTG CTGGAACAGA GTCAGCCAGT AGCGATCGTG
GCGACCGAGC GATCGCTACA ACCCCATTTG CCGCCTGTCG AAGCCTTGCG CCCCTTTTGC
CAAACCCTGC AGCGCGGACA GGAGGTCAAC CTCGGTGAGC TGGCCGATCG CTTCGCGCAG
TTTGGCTACG AGCGCGTCGA TACCGTTGAG ACGGAGGGGC AGTGGAGTCG GCGCGGCGAC
ATTATCGACC TTTTCCCCGT CTCGGCCGAG CTGCCGGTGC GGCTGGAATT ATTTGGCGAT
GAGCTGGAGC GACTACGGGA GTTTGATCCC GCAACCCAGC GATCGCTCGA TGAAATTGAG
GTCCTACGCT TAACCCCCAC CAGCTACGCC TCAGTCATCG CAGCGGCGCT CGCCGATCGC
TCCCTCGATG ACTGGCTGAC GGAAGCGGAA CAGGAAGCCT GGCAGGAAGG GCAGCCACCG
GAAGGAATGC GCCGCTTTTT GGGCGTAGCC TTTGAGCGAT CGGCTTCCCT GCTGGACTAT
TTACCAGCGG GCACCGTGAT CGCGATCGAT GAACCGTTGC AGTGTCGCGC CCACAGCGAT
CGCTGGATTG AGCACGTTCA GGATCACTGG CAGGAACAAG CACAGGTTTG GCCCGCCATC
CACCGCGACT TTCAAGCTGC TTGGGAAGAA ATCCGTTGCT TCCAGCGCAT TGAACTTTCA
CAACTCAATA GCAGCAGTGA CAGCGAGTTG CCGGTACTGG ATTTAGCGGC GCGATCGCTC
CCCGTTCTGC CCCACCAATT TGGCAAGCTG GCGGACTTCA TTCGGACTGA ACGCGATCGT
CACAGCATTT GGCTCGTCTC AGCTCAACCC TCGCGGATGG TGGCGCTGCT GCAGGAGCAC
GACTGTCCGT CGCAATTTAT TCCAAATCCC CGCGACTATC CCGCGATCGA TCGCCTCAGT
GAAAAGCGTG TCCCGATCGC CCTCAAGCAT TCGGGGTTAG CGGAGCTAGA AGGTTTCAGT
CTGCCGACGT TTCGGCTGAC CTTAATCACC GATCGCGAGT GCTTTGGTCA GCACGTCCTC
GCCTCACCAA CCTACGTGCG CAAGCGGCGG CGGGCGGCCT CCAAACAAGT CGATCGCGAT
CGCCTCAAAC CCGGCGACTA CGTGGTGCAT CGCAGTCACG GCATTGGGCG CTTCGTCAAA
CTAGAAAGCC TCAGCCTCAG TGGCGAAATG CGCGAGTATC TGGTACTGCA GTATGCCGAT
GGCCTGCTGC GGGTGGCTGC CGATCAGATG GGTAGCCTCA GTCGCTATCG CGGTATGGGC
GGTGAACGTC CCGAGCTGAG CAGCATGACT AGCAAGGCTT GGGAGAAAAC CAAGGCCAAG
GCCCGCAAAG CCGTCCGTAA GGTCGCCGTC GATCTGCTCA AGCTCTACGC CCAGCGATCG
CAGCAAGAGG GCCACGCCTA CCCACCGGAT CAGCCTTGGC AGCAGGAGCT GGAAGAGTCC
TTTCCCTACC AACCCACCGC CGATCAACTC AAGGCTGTCG AAGCAGTTAA GCGCGATATG
GAAAGTCCGC AACCCATGGA TCGCTTGGTC TGCGGCGACG TTGGTTTTGG CAAAACAGAG
GTGGCCGTTC GCGCCATCTT CAAGGCGGTG ACGGCGGGTA AACAGGTTGC TCTATTGGCC
CCAACCACGA TTCTGACCCA GCAGCATTAC CACACCCTCA AGGAACGCTT CGCACCCTAC
CCGATTCAGA TCGGTTTGCT CAACCGATTT CGGACGGCCA GTGAGCGCCA AAACATTCAG
CAACGGCTGG CGACTGGCGA ACTGGATGTG GTGGTTGGTA CCCATCAGCT ACTGAGCAAA
GGTACGCAAT TCCGTGATCT CGGCTTGCTA GTCGTCGATG AAGAGCAGCG CTTTGGGGTC
AACCAGAAGG AAAAAATCAA GGCGCTCAAA ACCCAAGTCG ATGTCCTAAC CCTGAGTGCC
ACACCGATTC CCCGCACTTT GTATATGGCG CTTTCCGGCG TGCGGGAAAT GAGTTTGATC
ACCACGCCGC CGCCTTCCCG TCGCCCAATT AAGACGCACC TGATGCCCTA CGACTTGGAG
GCAGTGCGAA CAGCGATTTC GCAAGAAATT GATCGCGGTG GCCAGGTCTT TTATGTCGTG
CCTCGCGTGG AGGGGATTGA AGCGATCGCG ACGCGGTTGC AGGAAATGCT GCCGAGCTTA
CGCATTGCTG TCGCCCACGG TCAGATGCCG GAAGGCGAAC TAGAGGCAAC CATGCTGGCC
TTCAACAACA ACGAAGCTGA TGTGATGATC TGCACCACAA TCATCGAGTC CGGCTTGGAT
ATTCCCCGCG TCAACACAAT CTTGATTGAG GACGCCCAGC GCTTTGGCCT GTCGCAGCTC
TATCAGTTGC GGGGGCGTGT CGGGCGGGCT GGGATCCAAG CCCATGCGTG GTTGTTCTAC
CCTGGCGAGA CGGTGCTGTC CGATCAGGCA CGGCAGCGAC TGCGAGCGAT TCAGGAGTTC
ACGCAACTCG GTTCCGGCTA TCAACTTGCC ATGCGCGACT TGGAAATTCG GGGCGTCGGT
AATCTGCTCG GCGTGGAACA GTCGGGACAG ATGGAAGCGA TCGGCTTTGA CCTCTATATG
GAGATGCTGC AGGAATCCCT CCAAGAAATT CGCGGTCAGG ATATTCCCCA GGTCGATGAC
ACCCAGATCG ACCTCAGCCT GACGGCCTTC ATTCCGGCTG ATTACATCCC CGACATCGAT
GCCAAGATGA GCGCCTATCG CGCTGTGGCT TCGGCGCAAA CACCGGCAGA TCTGCTGCAA
ATTGCTGCGG ATTGGAGCGA TCGCTACGGC TCACTGCCCG CCTCAGCGCA GCAACTGCTG
CGGGTGATGG AACTTAAACA AGTCGCTAAA TCCCTTGGCT TTGCGCGCAT TCGAACCGAG
TCGAAACAGC ACGTCATTCT GGAGACGCCG ATGGAAGCCC CCGCTTGGAA GCGGCTTCAC
GAAAAGCTTC CTAGCAATCT GCAAGGGCGA TTTGTCTATG CGGCTGGGCG AGTGACGGTA
CGAGGTTTGG GACTGCAGAG CGCCGATCAA CAGGTGGAAA ATTTGATCAC CTGGCTGACT
CCTCTCCAAG GAAGCTTGTC AGAAGTCGCG ATCGCAGCCT AA
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| Protein sequence | MTFSALIRTL ARSPLSQDLL TKLEKQSGLR LIGAGRLAQG LVTSALVQAQ SRSLLVICAT
LEEAGRWAAQ LEGMGWPTLH FYPTSESSPY EAFDPESELV WGQLQVLADL LEQSQPVAIV
ATERSLQPHL PPVEALRPFC QTLQRGQEVN LGELADRFAQ FGYERVDTVE TEGQWSRRGD
IIDLFPVSAE LPVRLELFGD ELERLREFDP ATQRSLDEIE VLRLTPTSYA SVIAAALADR
SLDDWLTEAE QEAWQEGQPP EGMRRFLGVA FERSASLLDY LPAGTVIAID EPLQCRAHSD
RWIEHVQDHW QEQAQVWPAI HRDFQAAWEE IRCFQRIELS QLNSSSDSEL PVLDLAARSL
PVLPHQFGKL ADFIRTERDR HSIWLVSAQP SRMVALLQEH DCPSQFIPNP RDYPAIDRLS
EKRVPIALKH SGLAELEGFS LPTFRLTLIT DRECFGQHVL ASPTYVRKRR RAASKQVDRD
RLKPGDYVVH RSHGIGRFVK LESLSLSGEM REYLVLQYAD GLLRVAADQM GSLSRYRGMG
GERPELSSMT SKAWEKTKAK ARKAVRKVAV DLLKLYAQRS QQEGHAYPPD QPWQQELEES
FPYQPTADQL KAVEAVKRDM ESPQPMDRLV CGDVGFGKTE VAVRAIFKAV TAGKQVALLA
PTTILTQQHY HTLKERFAPY PIQIGLLNRF RTASERQNIQ QRLATGELDV VVGTHQLLSK
GTQFRDLGLL VVDEEQRFGV NQKEKIKALK TQVDVLTLSA TPIPRTLYMA LSGVREMSLI
TTPPPSRRPI KTHLMPYDLE AVRTAISQEI DRGGQVFYVV PRVEGIEAIA TRLQEMLPSL
RIAVAHGQMP EGELEATMLA FNNNEADVMI CTTIIESGLD IPRVNTILIE DAQRFGLSQL
YQLRGRVGRA GIQAHAWLFY PGETVLSDQA RQRLRAIQEF TQLGSGYQLA MRDLEIRGVG
NLLGVEQSGQ MEAIGFDLYM EMLQESLQEI RGQDIPQVDD TQIDLSLTAF IPADYIPDID
AKMSAYRAVA SAQTPADLLQ IAADWSDRYG SLPASAQQLL RVMELKQVAK SLGFARIRTE
SKQHVILETP MEAPAWKRLH EKLPSNLQGR FVYAAGRVTV RGLGLQSADQ QVENLITWLT
PLQGSLSEVA IAA
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